annotate test-data/Quast_report.txt @ 2:2f581f956e1c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 930a43568ac0d4d32dde38a56fbb0b826f8f591b
author iuc
date Fri, 04 Nov 2016 05:06:15 -0400
parents 0edbf19cf5eb
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736d51130b41 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit d0e7095e03f99c80d6cc8f7a2bfb3c5bef33df09
iuc
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1 All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).
736d51130b41 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit d0e7095e03f99c80d6cc8f7a2bfb3c5bef33df09
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2
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2f581f956e1c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 930a43568ac0d4d32dde38a56fbb0b826f8f591b
iuc
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3 Assembly contigs_1_fasta
1
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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4 # contigs (>= 0 bp) 3
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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5 # contigs (>= 1000 bp) 3
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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6 Total length (>= 0 bp) 6710
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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7 Total length (>= 1000 bp) 6710
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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8 # contigs 3
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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9 Largest contig 3980
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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10 Total length 6710
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
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11 GC (%) 51.28
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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12 N50 3980
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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13 N75 1610
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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14 L50 1
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
iuc
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15 L75 2
0edbf19cf5eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
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16 # N's per 100 kbp 0.00