Mercurial > repos > iuc > quast
annotate test-data/Quast_report_withref.tsv @ 3:6fcbee531de6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
author | iuc |
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date | Fri, 29 Sep 2017 05:51:26 -0400 |
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3
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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1 Assembly contigs_1_fasta |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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2 # contigs (>= 0 bp) 3 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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3 # contigs (>= 1000 bp) 3 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
4 Total length (>= 0 bp) 6710 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
5 Total length (>= 1000 bp) 6710 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
6 # contigs 3 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
7 Largest contig 3980 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
8 Total length 6710 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
9 Reference length 6650 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
10 GC (%) 51.28 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
11 Reference GC (%) 52.00 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
12 N50 3980 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
13 NG50 3980 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
14 N75 1610 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
15 NG75 1610 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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16 L50 1 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
17 LG50 1 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
18 L75 2 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
19 LG75 2 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
20 # misassemblies 0 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
21 # misassembled contigs 0 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
22 Misassembled contigs length 0 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
23 # local misassemblies 0 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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24 # unaligned mis. contigs 0 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
25 # unaligned contigs 0 + 1 part |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
26 Unaligned length 1950 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
27 Genome fraction (%) 71.579 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
28 Duplication ratio 1.000 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
29 # N's per 100 kbp 0.00 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
30 # mismatches per 100 kbp 0.00 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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31 # indels per 100 kbp 0.00 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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32 Largest alignment 2030 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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33 Total aligned length 4760 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
34 NA50 1610 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
|
35 NGA50 1610 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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36 LA50 2 |
6fcbee531de6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
iuc
parents:
diff
changeset
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37 LGA50 2 |