Mercurial > repos > iuc > quast
comparison quast.xml @ 1:0edbf19cf5eb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
| author | iuc |
|---|---|
| date | Wed, 02 Nov 2016 09:42:45 -0400 |
| parents | 736d51130b41 |
| children | 2f581f956e1c |
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| 0:736d51130b41 | 1:0edbf19cf5eb |
|---|---|
| 1 <tool id="quast" name="Quast" version="4.1" > | 1 <tool id="quast" name="Quast" version="4.1.1" > |
| 2 <description>Genome assembly Quality</description> | 2 <description>Genome assembly Quality</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="4.1">quast</requirement> | 4 <requirement type="package" version="4.1">quast</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 29 #end if | 29 #end if |
| 30 #if $input_size: | 30 #if $input_size: |
| 31 --est-ref-size $input_size | 31 --est-ref-size $input_size |
| 32 #end if | 32 #end if |
| 33 --min-contig $min_contig | 33 --min-contig $min_contig |
| 34 -l | |
| 35 #set names = ','.join( ['"'+str( $x.input.element_identifier)+'"' for $x in $files ]) | |
| 36 $names | |
| 34 --contig-thresholds $threshold_contig | 37 --contig-thresholds $threshold_contig |
| 35 #for $k in $files: | 38 #for $k in $files: |
| 36 #if $k.type_file == "scaffold": | 39 #if $k.type_file == "scaffold": |
| 37 -s | 40 -s |
| 38 #end if | 41 #end if |