Mercurial > repos > iuc > quast

diff quast.xml @ 1:0edbf19cf5eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8
author iuc
date Wed, 02 Nov 2016 09:42:45 -0400
parents 736d51130b41
children 2f581f956e1c
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line diff
--- a/quast.xml	Tue Sep 13 14:43:54 2016 -0400
+++ b/quast.xml	Wed Nov 02 09:42:45 2016 -0400
@@ -1,4 +1,4 @@
-<tool id="quast" name="Quast" version="4.1" >
+<tool id="quast" name="Quast" version="4.1.1" >
     <description>Genome assembly Quality</description>
     <requirements>
         <requirement type="package" version="4.1">quast</requirement>
@@ -31,6 +31,9 @@
             --est-ref-size $input_size
         #end if
         --min-contig $min_contig
+        -l
+        #set names = ','.join( ['"'+str( $x.input.element_identifier)+'"' for $x in $files ])
+        $names
         --contig-thresholds $threshold_contig
         #for $k in $files:
             #if $k.type_file == "scaffold":