Mercurial > repos > iuc > quast

comparison test-data/test2_report.tab @ 9:45924fa8d8c5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
author iuc
date Mon, 08 Nov 2021 09:03:00 +0000
parents
children 3061c8b029e5
comparison
equal deleted inserted replaced
8:ebb0dcdb621a 9:45924fa8d8c5
1 Assembly contig1 contig2
2 # contigs (>= 0 bp) 3 1
3 # contigs (>= 1000 bp) 3 1
4 Total length (>= 0 bp) 6710 6650
5 Total length (>= 1000 bp) 6710 6650
6 # contigs 3 1
7 Largest contig 3980 6650
8 Total length 6710 6650
9 Reference length 6650 6650
10 GC (%) 51.28 52.00
11 Reference GC (%) 52.00 52.00
12 N50 3980 6650
13 NG50 3980 6650
14 N75 1610 6650
15 NG75 1610 6650
16 L50 1 1
17 LG50 1 1
18 L75 2 1
19 LG75 2 1
20 # misassemblies 0 0
21 # misassembled contigs 0 0
22 Misassembled contigs length 0 0
23 # local misassemblies 0 0
24 # scaffold gap ext. mis. 0 0
25 # scaffold gap loc. mis. 0 0
26 # unaligned mis. contigs 0 0
27 # unaligned contigs 0 + 1 part 0 + 0 part
28 Unaligned length 1950 0
29 Genome fraction (%) 71.579 100.000
30 Duplication ratio 1.000 1.000
31 # N's per 100 kbp 0.00 0.00
32 # mismatches per 100 kbp 0.00 0.00
33 # indels per 100 kbp 0.00 0.00
34 # genomic features 7 + 7 part 13 + 1 part
35 Largest alignment 2030 6650
36 Total aligned length 4760 6650
37 NA50 1610 6650
38 NGA50 1610 6650
39 NA75 - 6650
40 NGA75 - 6650
41 LA50 2 1
42 LGA50 2 1
43 LA75 - 1
44 LGA75 - 1
45 K-mer-based compl. (%) 68.09 100.00
46 K-mer-based cor. length (%) 100.00 100.00
47 K-mer-based mis. length (%) 0.00 0.00
48 # k-mer-based misjoins 0 0