view test-data/test2_report.tab @ 15:72472698a2df draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 617a2c388e73d6c93a2a1db9a58b914510052b69
author iuc
date Thu, 02 Mar 2023 10:38:54 +0000
parents 3061c8b029e5
children
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Assembly	contig1	contig2
# contigs (>= 0 bp)	3	1
# contigs (>= 1000 bp)	3	1
Total length (>= 0 bp)	6710	6650
Total length (>= 1000 bp)	6710	6650
# contigs	3	1
Largest contig	3980	6650
Total length	6710	6650
Reference length	6650	6650
GC (%)	51.28	52.00
Reference GC (%)	52.00	52.00
N50	3980	6650
NG50	3980	6650
N90	1120	6650
NG90	1120	6650
auN	2934.0	6650.0
auNG	2960.4	6650.0
L50	1	1
LG50	1	1
L90	3	1
LG90	3	1
# misassemblies	0	0
# misassembled contigs	0	0
Misassembled contigs length	0	0
# local misassemblies	0	0
# scaffold gap ext. mis.	0	0
# scaffold gap loc. mis.	0	0
# unaligned mis. contigs	0	0
# unaligned contigs	0 + 1 part	0 + 0 part
Unaligned length	1950	0
Genome fraction (%)	71.579	100.000
Duplication ratio	1.000	1.000
# N's per 100 kbp	0.00	0.00
# mismatches per 100 kbp	0.00	0.00
# indels per 100 kbp	0.00	0.00
# genomic features	7 + 7 part	13 + 1 part
Largest alignment	2030	6650
Total aligned length	4760	6650
NA50	1610	6650
NGA50	1610	6650
NA90	-	6650
NGA90	-	6650
auNA	1187.4	6650.0
auNGA	1198.1	6650.0
LA50	2	1
LGA50	2	1
LA90	-	1
LGA90	-	1
K-mer-based compl. (%)	68.09	100.00
K-mer-based cor. length (%)	100.00	100.00
K-mer-based mis. length (%)	0.00	0.00
# k-mer-based misjoins	0	0