diff macros.xml @ 14:3061c8b029e5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124

--- a/macros.xml	Fri Mar 25 17:36:59 2022 +0000
+++ b/macros.xml	Fri Aug 05 15:21:27 2022 +0000
@@ -1,8 +1,12 @@
 <macros>
+    <token name="@TOOL_VERSION@">5.2.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">21.01</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">quast</requirement>
-            <requirement type="package" version="0.69.8">circos</requirement>
+            <requirement type="package" version="0.7.17">bwa</requirement>
+            <requirement type="package" version="2.30.0">bedtools</requirement>
         </requirements>
     </xml>
     <xml name="bio_tools">
@@ -10,8 +14,6 @@
             <xref type="bio.tools">quast</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">5.0.2</token>
-    <token name="@VERSION_SUFFIX@">5</token>
     <xml name="gene_thresholds">
         <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/>
     </xml>
@@ -23,4 +25,8 @@
             <citation type="doi">10.1093/bioinformatics/btt086</citation>
         </citations>
     </xml>
+    <xml name="min_identity_macros" token_value="">
+        <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments
+            with IDY% less than 80.0% will be filtered regardless of this threshold. "/>
+    </xml>
 </macros>