view macros.xml @ 14:3061c8b029e5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124

<macros>
    <token name="@TOOL_VERSION@">5.2.0</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">21.01</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">quast</requirement>
            <requirement type="package" version="0.7.17">bwa</requirement>
            <requirement type="package" version="2.30.0">bedtools</requirement>
        </requirements>
    </xml>
    <xml name="bio_tools">
        <xrefs>
            <xref type="bio.tools">quast</xref>
        </xrefs>
    </xml>
    <xml name="gene_thresholds">
        <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/bty266</citation>
            <citation type="doi">10.1093/bioinformatics/btw379</citation>
            <citation type="doi">10.1093/bioinformatics/btv697</citation>
            <citation type="doi">10.1093/bioinformatics/btt086</citation>
        </citations>
    </xml>
    <xml name="min_identity_macros" token_value="">
        <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments
            with IDY% less than 80.0% will be filtered regardless of this threshold. "/>
    </xml>
</macros>