Mercurial > repos > iuc > quast
diff test-data/test5.tab @ 9:45924fa8d8c5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
| author | iuc |
|---|---|
| date | Mon, 08 Nov 2021 09:03:00 +0000 |
| parents | |
| children | 3061c8b029e5 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test5.tab Mon Nov 08 09:03:00 2021 +0000 @@ -0,0 +1,54 @@ +Assembly contig1 contig2 +# contigs (>= 0 bp) 3 1 +# contigs (>= 1000 bp) 3 1 +Total length (>= 0 bp) 6710 6650 +Total length (>= 1000 bp) 6710 6650 +# contigs 3 1 +Largest contig 3980 6650 +Total length 6710 6650 +Reference length 6650 6650 +GC (%) 51.28 52.00 +Reference GC (%) 52.00 52.00 +N50 3980 6650 +NG50 3980 6650 +N75 1610 6650 +NG75 1610 6650 +L50 1 1 +LG50 1 1 +L75 2 1 +LG75 2 1 +# total reads 331 331 +# left 0 0 +# right 0 0 +Mapped (%) 2.72 2.42 +Reference mapped (%) 2.42 2.42 +Properly paired (%) 0.0 0.0 +Reference properly paired (%) 0.0 0.0 +Avg. coverage depth 0 1 +Reference avg. coverage depth 1 1 +Coverage >= 1x (%) 42.22 48.17 +Reference coverage >= 1x (%) 48.17 48.17 +# misassemblies 0 0 +# misassembled contigs 0 0 +Misassembled contigs length 0 0 +# local misassemblies 0 0 +# scaffold gap ext. mis. 0 0 +# scaffold gap loc. mis. 0 0 +# unaligned mis. contigs 0 0 +# unaligned contigs 0 + 1 part 0 + 0 part +Unaligned length 1950 0 +Genome fraction (%) 71.579 100.000 +Duplication ratio 1.000 1.000 +# N's per 100 kbp 0.00 0.00 +# mismatches per 100 kbp 0.00 0.00 +# indels per 100 kbp 0.00 0.00 +Largest alignment 2030 6650 +Total aligned length 4760 6650 +NA50 1610 6650 +NGA50 1610 6650 +NA75 - 6650 +NGA75 - 6650 +LA50 2 1 +LGA50 2 1 +LA75 - 1 +LGA75 - 1