Mercurial > repos > iuc > quast
view test-data/test5.tab @ 14:3061c8b029e5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
| author | iuc |
|---|---|
| date | Fri, 05 Aug 2022 15:21:27 +0000 |
| parents | 45924fa8d8c5 |
| children |
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Assembly contig1 contig2 # contigs (>= 0 bp) 3 1 # contigs (>= 1000 bp) 3 1 Total length (>= 0 bp) 6710 6650 Total length (>= 1000 bp) 6710 6650 # contigs 3 1 Largest contig 3980 6650 Total length 6710 6650 Reference length 6650 6650 GC (%) 51.28 52.00 Reference GC (%) 52.00 52.00 N50 3980 6650 NG50 3980 6650 N90 1120 6650 NG90 1120 6650 auN 2934.0 6650.0 auNG 2960.4 6650.0 L50 1 1 LG50 1 1 L90 3 1 LG90 3 1 # total reads 330 330 # left 0 0 # right 0 0 Mapped (%) 2.73 2.42 Reference mapped (%) 2.42 2.42 Properly paired (%) 0.0 0.0 Reference properly paired (%) 0.0 0.0 Avg. coverage depth 0 1 Reference avg. coverage depth 1 1 Coverage >= 1x (%) 42.22 48.17 Reference coverage >= 1x (%) 48.17 48.17 # misassemblies 0 0 # misassembled contigs 0 0 Misassembled contigs length 0 0 # local misassemblies 0 0 # scaffold gap ext. mis. 0 0 # scaffold gap loc. mis. 0 0 # unaligned mis. contigs 0 0 # unaligned contigs 0 + 1 part 0 + 0 part Unaligned length 1950 0 Genome fraction (%) 71.579 100.000 Duplication ratio 1.000 1.000 # N's per 100 kbp 0.00 0.00 # mismatches per 100 kbp 0.00 0.00 # indels per 100 kbp 0.00 0.00 Largest alignment 2030 6650 Total aligned length 4760 6650 NA50 1610 6650 NGA50 1610 6650 NA90 - 6650 NGA90 - 6650 auNA 1187.4 6650.0 auNGA 1198.1 6650.0 LA50 2 1 LGA50 2 1 LA90 - 1 LGA90 - 1