view macros.xml @ 0:e01c989c7543 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid commit 39918bfdb08f06862ca395ce58a6f5e4f6dd1a5e

<?xml version="1.0"?>
<macros>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1038/nature14966</citation>
        </citations>
    </xml>
    <xml name="requirements">
        <requirements>
            <requirement type="package" >r</requirement>
            <requirement type="package" >r-tsne</requirement>
            <requirement type="package" >r-pheatmap</requirement>
            <requirement type="package" >r-mass</requirement>
            <requirement type="package" >r-mclust</requirement>
            <requirement type="package" >r-flexmix</requirement>
            <requirement type="package" >r-lattice</requirement>
            <requirement type="package" >r-fpc</requirement>
            <requirement type="package" >r-rcolorbrewer</requirement>
            <requirement type="package" >r-permute</requirement>
            <requirement type="package" >r-amap</requirement>
            <requirement type="package" >r-locfit</requirement>
        </requirements>
    </xml>
    <token name="@VERSION@">1.0</token>
    <token name="@SCRIPT_DIR@">$__tool_directory__/scripts</token>
    
    <!-- Set hidden/retired outputs -->
    <token name="@out_rdat_filter@">out_rdat_filter.rds</token>
    <token name="@out_rdat_kmeans@">out_rdat_kmeans.rds</token>
    <token name="@out_rdat_outlier@">out_rdat_outlier.rds</token>

    <!-- Set hidden/retired inputs -->
    <!-- tsne -> outlier -> kmeans -> filter -->
    <token name="@inp_rdat_kmeans@">out_rdat_filter.rds</token>
    <token name="@inp_rdat_outlier@">out_rdat_kmeans.rds</token>
    <token name="@inp_rdat_tsne@">out_rdat_outlier.rds</token>   
</macros>