Mercurial > repos > iuc > raceid_trajectory

changeset 8:c92d0f9338c5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 455bad7eca54164f95755174904842907846bb42"
author iuc
date Mon, 20 Dec 2021 10:13:20 +0000
parents e93b008c637a
children 2af7c5086a96
files macros.xml raceid_trajectory.xml
diffstat 2 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Dec 02 16:21:47 2021 +0000
+++ b/macros.xml	Mon Dec 20 10:13:20 2021 +0000
@@ -26,7 +26,8 @@
 }
     </token>
     <token name="@TOOL_VERSION@">0.2.3</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@PROFILE@">21.01</token>
 
     <macro name="version_command_config" token_prog="temp" token_cheetah="temp2" token_out="2&#62; '$outlog'">
         <version_command><![CDATA[
--- a/raceid_trajectory.xml	Thu Dec 02 16:21:47 2021 +0000
+++ b/raceid_trajectory.xml	Mon Dec 20 10:13:20 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="raceid_trajectory" name="Lineage computation using StemID" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" >
+<tool id="raceid_trajectory" name="Lineage computation using StemID" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>generates lineage from prior clustering</description>
     <macros>
         <import>macros.xml</import>
@@ -8,7 +8,7 @@
     <expand macro="version_command_config" prog="pseudotemporal.R" cheetah="TRAJECTORY_CHEETAH" />
 
     <inputs>
-        <param name="inputrds" type="data" format="rdata" label="Input RDS" help="This is the output RData file given by the Cluster stage" />
+        <param name="inputrds" type="data" format="rds" label="Input RDS" help="This is the output RDS file given by the Cluster stage" />
         <section name="projcell" title="Compute transcriptome entropy of each cell" expanded="true" >
             <param name="knn" type="integer" min="0" value="3" label="KNN" help="Number of nearest neighbours to consider." />
             <param name="cthr" type="integer" min="0" value="5" label="Cluster Threshold" help="Clusters to be included in the StemID analysis must have more than this number of cells" />
@@ -44,7 +44,7 @@
     </inputs>
     <outputs>
         <data name="outpdf" format="pdf" label="${tool.name} on ${on_string}: PDF Report" />
-        <data name="outrdat" format="rdata" label="${tool.name} on ${on_string}: RDS" />
+        <data name="outrdat" format="rds" label="${tool.name} on ${on_string}: RDS" />
         <data name="outlog" format="txt" label="${tool.name} on ${on_string}: Log" >
             <filter>use_log</filter>
         </data>