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annotate test-data/scaffold_log_02.txt @ 0:a04e64efa43a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
author iuc
date Wed, 10 Nov 2021 23:33:13 +0000
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a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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1 [M::mm_idx_gen::0.012*1.10] collected minimizers
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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2 [M::mm_idx_gen::0.017*1.55] sorted minimizers
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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3 [M::main::0.017*1.55] loaded/built the index for 1 target sequence(s)
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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4 [M::mm_mapopt_update::0.018*1.52] mid_occ = 100
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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5 [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 1
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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6 [M::mm_idx_stat::0.019*1.50] distinct minimizers: 50129 (99.93% are singletons); average occurrences: 1.001; average spacing: 9.979; total length: 500542
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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7 [M::worker_pipeline::0.031*1.76] mapped 5 sequences
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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8 [M::main] Version: 2.20-r1061
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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9 [M::main] CMD: minimap2 -k19 -w19 -A1 -B19 -O39,81 -E3,1 -s200 -z200 --min-occ-floor=100 /tmp/tmp_4n9zeh2/files/2/a/f/dataset_2af88e74-b260-48d7-94a0-0b5d5595d241.dat /tmp/tmp_4n9zeh2/files/e/6/b/dataset_e6b94b71-fa55-4792-a67f-4c6eeedc1fc7.dat
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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10 [M::main] Real time: 0.033 sec; CPU: 0.057 sec; Peak RSS: 0.011 GB