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annotate test-data/scaffold_log_03.txt @ 0:a04e64efa43a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
author iuc
date Wed, 10 Nov 2021 23:33:13 +0000
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a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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1 [M::mm_idx_gen::0.015*1.08] collected minimizers
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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2 [M::mm_idx_gen::0.020*1.51] sorted minimizers
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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3 [M::main::0.020*1.51] loaded/built the index for 1 target sequence(s)
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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4 [M::mm_mapopt_update::0.021*1.47] mid_occ = 100
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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5 [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 1
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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6 [M::mm_idx_stat::0.022*1.45] distinct minimizers: 50129 (99.93% are singletons); average occurrences: 1.001; average spacing: 9.979; total length: 500542
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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7 [M::worker_pipeline::0.071*1.05] mapped 5 sequences
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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8 [M::main] Version: 2.22-r1101
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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9 [M::main] CMD: minimap2 -k19 -w19 -A1 -B19 -O39,81 -E3,1 -s200 -z200 --min-occ-floor=100 /tmp/tmpv_me33la/files/8/7/b/dataset_87b27ce8-4668-4fc1-a8e0-b9f1bace010d.dat /tmp/tmpv_me33la/files/d/9/d/dataset_d9d32fa5-d56b-4744-9942-e33667c038ce.dat
a04e64efa43a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
iuc
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10 [M::main] Real time: 0.083 sec; CPU: 0.086 sec; Peak RSS: 0.011 GB