Mercurial > repos > iuc > raven
annotate raven.xml @ 5:5c55448d0f33 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
author | iuc |
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date | Sat, 18 May 2024 21:31:16 +0000 |
parents | 3edba9afc9bc |
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rev | line source |
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1
f8564b2d7f63
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit cb3f04d604f2ce99f66b3d6e142d970063f9fd78"
iuc
parents:
0
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1 <tool id="raven" name="Raven" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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2 <description>De novo assembly of Oxford Nanopore Technologies data</description> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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3 <macros> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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4 <import>macros.xml</import> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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5 </macros> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
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6 <expand macro="requirements"/> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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7 <expand macro="version_command"/> |
5
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
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8 <!--TODO in future version : enable CUDA support for racon polishing--> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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9 <command detect_errors="exit_code"><![CDATA[ |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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10 #if $input_reads.is_of_type("fasta") |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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11 ln -s '$input_reads' ./input.fa && |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
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12 #set input = "input.fa" |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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13 #elif $input_reads.is_of_type("fasta.gz") |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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14 ln -s '$input_reads' ./input.fa.gz && |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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15 #set input = "input.fa.gz" |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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16 #elif $input_reads.is_of_type("fastq") |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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17 ln -s '$input_reads' ./input.fq && |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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18 #set input = "input.fq" |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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19 #elif $input_reads.is_of_type("fastq.gz") |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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20 ln -s '$input_reads' ./input.fq.gz && |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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21 #set input = "input.fq.gz" |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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22 #end if |
2
3edba9afc9bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"
iuc
parents:
1
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23 raven |
3edba9afc9bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"
iuc
parents:
1
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changeset
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24 --kmer-len '$kmer_len' |
3edba9afc9bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"
iuc
parents:
1
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changeset
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25 --window-len '$window_len' |
3edba9afc9bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"
iuc
parents:
1
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26 --frequency '$frequency' |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
changeset
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27 --polishing-rounds '$polishing_rounds' |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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28 --match '$match' |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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29 --mismatch '$mismatch' |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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30 --gap '$gap' |
5
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
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31 --kMaxNumOverlaps '$kMaxNumOverlaps' |
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
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32 --identity $identity |
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
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33 --min-unitig-size $min_unitig_size |
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
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34 --use-micromizers $use_micromizers |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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35 $graphical_fragment_assembly |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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36 --disable-checkpoints |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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37 -t \${GALAXY_SLOTS:-4} |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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38 '$input' |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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39 > '$out_fasta' |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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40 ]]></command> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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41 <inputs> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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42 <param name="input_reads" type="data" format="fasta,fastq,fasta.gz,fastq.gz"/> |
2
3edba9afc9bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"
iuc
parents:
1
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43 <param argument="--kmer-len" type="integer" value="15" label="Length of minimizers used to find overlaps"/> |
3edba9afc9bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"
iuc
parents:
1
diff
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44 <param argument="--window-len" type="integer" value="5" label="Length of sliding window from which minimizers are sampled"/> |
3edba9afc9bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"
iuc
parents:
1
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45 <param argument="--frequency" type="float" value="0.001" label="Threshold for ignoring most frequent minimizers"/> |
5
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
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46 <param argument="--identity" type="float" value="0" label="Threshold for overlap between two reads in order to construct an edge between them" help="If set to zero, this functionality is disabled"/> |
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
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47 <param argument="--kMaxNumOverlaps" type="integer" value="32" label="Maximum number of overlaps that will be taken during FindOverlapsAndCreatePiles stage"/> |
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
diff
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48 <param argument="--min-unitig-size" type="integer" value="9999" label="Minimal unitig size"/> |
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
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49 |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
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50 <param argument="--polishing-rounds" type="integer" value="2" min="0" label="Number of times racon polishing is invoked"/> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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51 <param argument="--match" type="integer" value="3"/> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
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52 <param argument="--mismatch" type="integer" value="-5"/> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
diff
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53 <param argument="--gap" type="integer" value="-4" max="-1"/> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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54 <param argument="--graphical-fragment-assembly" type="boolean" truevalue="--graphical-fragment-assembly out.gfa" falsevalue="" label="output graphical fragment assembly file?" checked="true"/> |
5
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
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55 <param argument="--use-micromizers" type="boolean" truevalue="--use-micromizers" falsevalue="" label="Use micromizers instead of mimizers in graph construction" help="Performance will increase slightly and memory consumption will decrease but results could be slightly worse"/> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
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56 </inputs> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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57 <outputs> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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58 <data name="out_gfa" format="gfa1" label="${tool.name} on ${on_string} (Graphical Fragment Assembly)" from_work_dir="out.gfa"> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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59 <filter>graphical_fragment_assembly</filter> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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60 </data> |
5
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
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61 <data name="out_fasta" format="fasta" label="${tool.name} on ${on_string} (FASTA)"/> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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62 </outputs> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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63 <tests> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
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64 <test expect_num_outputs="2"> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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65 <param name="input_reads" ftype="fastq.gz" value="ERA476754.fastq.gz"/> |
1
f8564b2d7f63
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit cb3f04d604f2ce99f66b3d6e142d970063f9fd78"
iuc
parents:
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66 <output name="out_gfa"> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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67 <assert_contents> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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68 <has_n_lines n="2"/> |
5
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
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69 <has_text_matching expression="^S\tUtg52\t[ATCG]{30000,40000}\tLN:i:36[0-9]{3}\tRC:i:22\tdp:f:8\nS\tCtg54\t[ATCG]{9000,10000}\tLN:i:9361\tRC:i:4"/> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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70 </assert_contents> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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71 </output> |
1
f8564b2d7f63
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit cb3f04d604f2ce99f66b3d6e142d970063f9fd78"
iuc
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72 <output name="out_fasta"> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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73 <assert_contents> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
iuc
parents:
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74 <has_n_lines n="2"/> |
5
5c55448d0f33
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 7bd5e845f7f0a531d619f66193470127a2a7a7ea
iuc
parents:
2
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75 <has_text_matching expression="^>Utg52 LN:i:36[0-9]{3} RC:i:22 XO:i:0\n[ATCG]{30000,40000}$"/> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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76 </assert_contents> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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77 </output> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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78 </test> |
1
f8564b2d7f63
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit cb3f04d604f2ce99f66b3d6e142d970063f9fd78"
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79 <!-- <test expect_num_outputs="1"> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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80 <param name="input_reads" ftype="fastq.gz" value="ERA476754.fastq.gz"/> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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81 <param name="graphical_fragment_assembly" value="false"/> |
1
f8564b2d7f63
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit cb3f04d604f2ce99f66b3d6e142d970063f9fd78"
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82 <output name="out_fasta"> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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83 <assert_contents> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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84 <has_n_lines n="2"/> |
1
f8564b2d7f63
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit cb3f04d604f2ce99f66b3d6e142d970063f9fd78"
iuc
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85 <has_text_matching expression="^>Utg52 LN:i:36[0-9]{3} RC:i:22 XO:i:0\n[ATCG]{30000,40000}$"/> |
0
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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86 </assert_contents> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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87 </output> |
1
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit cb3f04d604f2ce99f66b3d6e142d970063f9fd78"
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88 </test> --> |
0
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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89 </tests> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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90 <help><![CDATA[ |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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91 .. class:: infomark |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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92 |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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93 **What it does** |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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94 |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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95 @WID@ |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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96 |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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97 **Input** |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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98 - fasta / fastq / fasta.gz / fastq.gz data |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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99 |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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100 **Output** |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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101 |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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102 - Assembled genome (FASTA) |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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103 - Graphical fragment assembly (optional) (.txt) |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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104 |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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105 **References** |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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106 |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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107 @REFERENCES@ |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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108 ]]></help> |
33b7d8481a76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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109 <expand macro="citations"/> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit 0a6ad31f5095ddf859a4d1819fce5d347f13c462"
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110 </tool> |