Mercurial > repos > iuc > raxml
comparison raxml.xml @ 5:29ff6a849eac draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit 6e1b47bf8f06b9d92b369c2f36e52f4fc451d39c
author | iuc |
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date | Thu, 21 Jul 2022 15:16:20 +0000 |
parents | 73a469f7dc96 |
children | ea30d3089354 |
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4:73a469f7dc96 | 5:29ff6a849eac |
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1 <tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="8.2.4+galaxy2"> | 1 <tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> |
2 <description>- Maximum Likelihood based inference of large phylogenetic trees</description> | 2 <description>- Maximum Likelihood based inference of large phylogenetic trees</description> |
3 <macros> | |
4 <token name="@TOOL_VERSION@">8.2.4</token> | |
5 <token name="@VERSION_SUFFIX@">3</token> | |
6 </macros> | |
7 <xrefs> | |
8 <xref type="bio.tools">raxml</xref> | |
9 </xrefs> | |
3 <requirements> | 10 <requirements> |
4 <requirement type="package" version="8.2.4">raxml</requirement> | 11 <requirement type="package" version="@TOOL_VERSION@">raxml</requirement> |
5 <requirement type="package" version="3.6">python</requirement> | 12 <requirement type="package" version="3.6">python</requirement> |
6 </requirements> | 13 </requirements> |
7 <command detect_errors="exit_code"><![CDATA[ | 14 <command detect_errors="exit_code"><![CDATA[ |
8 ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1 | 15 ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1 |
9 slots=\${GALAXY_SLOTS:-1}; | 16 slots=\${GALAXY_SLOTS:-1}; |
464 <output name="parsimonyTree" ftype="nhx"> | 471 <output name="parsimonyTree" ftype="nhx"> |
465 <assert_contents> | 472 <assert_contents> |
466 <has_text_matching expression="Chicken" /> | 473 <has_text_matching expression="Chicken" /> |
467 </assert_contents> | 474 </assert_contents> |
468 </output> | 475 </output> |
469 <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx"/> | 476 <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx" compare="re_match"/> |
470 <output name="bestTree" ftype="nhx"> | 477 <output name="bestTree" ftype="nhx"> |
471 <assert_contents> | 478 <assert_contents> |
472 <has_text_matching expression="Whale" /> | 479 <has_text_matching expression="Whale" /> |
473 </assert_contents> | 480 </assert_contents> |
474 </output> | 481 </output> |