Mercurial > repos > iuc > raxml
changeset 5:29ff6a849eac draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit 6e1b47bf8f06b9d92b369c2f36e52f4fc451d39c
| author | iuc |
|---|---|
| date | Thu, 21 Jul 2022 15:16:20 +0000 |
| parents | 73a469f7dc96 |
| children | ea30d3089354 |
| files | raxml.xml test-data/RAxML_parsimonyTree.galaxy.multi |
| diffstat | 2 files changed, 11 insertions(+), 4 deletions(-) [+] |
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--- a/raxml.xml Sun Apr 19 16:44:27 2020 -0400 +++ b/raxml.xml Thu Jul 21 15:16:20 2022 +0000 @@ -1,7 +1,14 @@ -<tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="8.2.4+galaxy2"> +<tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> <description>- Maximum Likelihood based inference of large phylogenetic trees</description> + <macros> + <token name="@TOOL_VERSION@">8.2.4</token> + <token name="@VERSION_SUFFIX@">3</token> + </macros> + <xrefs> + <xref type="bio.tools">raxml</xref> + </xrefs> <requirements> - <requirement type="package" version="8.2.4">raxml</requirement> + <requirement type="package" version="@TOOL_VERSION@">raxml</requirement> <requirement type="package" version="3.6">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ @@ -466,7 +473,7 @@ <has_text_matching expression="Chicken" /> </assert_contents> </output> - <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx"/> + <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx" compare="re_match"/> <output name="bestTree" ftype="nhx"> <assert_contents> <has_text_matching expression="Whale" />
--- a/test-data/RAxML_parsimonyTree.galaxy.multi Sun Apr 19 16:44:27 2020 -0400 +++ b/test-data/RAxML_parsimonyTree.galaxy.multi Thu Jul 21 15:16:20 2022 +0000 @@ -1,1 +1,1 @@ -((Whale:0.00000100000050002909,(((Human:0.53594305845070155936,Seal:0.02530146292078635367):0.22193621954611089664,Frog:0.10286092072478680848):0.21862941933399418493,(Chicken:0.20757792196205043789,(Mouse:0.08330390883767016530,Rat:0.08037715347256141341):0.07528731153882931015):0.12712658591923928220):0.03338415401578518488):0.14391313040760642106,(Carp:0.35121248438619490084,Loach:0.00000100000050002909):0.21735437670664689569,Cow:0.06259549717909577982):0.0; +\(\(Whale:0.0000[0-9]*,\(\(\(Human:0.5359[0-9]*,Seal:0.0253[0-9]*\):0.2219[0-9]*,Frog:0.1028[0-9]*\):0.2186[0-9]*,\(Chicken:0.2075[0-9]*,\(Mouse:0.0833[0-9]*,Rat:0.0803[0-9]*\):0.0752[0-9]*\):0.1271[0-9]*\):0.0333[0-9]*\):0.1439[0-9]*,\(Carp:0.3512[0-9]*,Loach:0.0000[0-9]*\):0.2173[0-9]*,Cow:0.0625[0-9]*\):0.0;