diff raxml.xml @ 5:29ff6a849eac draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit 6e1b47bf8f06b9d92b369c2f36e52f4fc451d39c

--- a/raxml.xml	Sun Apr 19 16:44:27 2020 -0400
+++ b/raxml.xml	Thu Jul 21 15:16:20 2022 +0000
@@ -1,7 +1,14 @@
-<tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="8.2.4+galaxy2">
+<tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>- Maximum Likelihood based inference of large phylogenetic trees</description>
+    <macros>
+        <token name="@TOOL_VERSION@">8.2.4</token>
+        <token name="@VERSION_SUFFIX@">3</token>
+    </macros>
+    <xrefs>
+        <xref type="bio.tools">raxml</xref>
+    </xrefs>
     <requirements>
-        <requirement type="package" version="8.2.4">raxml</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">raxml</requirement>
         <requirement type="package" version="3.6">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
@@ -466,7 +473,7 @@
                     <has_text_matching expression="Chicken" />
                 </assert_contents>
             </output>
-            <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx"/>
+            <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx" compare="re_match"/>
             <output name="bestTree" ftype="nhx">
                 <assert_contents>
                     <has_text_matching expression="Whale" />