Mercurial > repos > iuc > recentrifuge

comparison test-data/centrifuge_test/test2_csv.log @ 4:12f0968f171c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
author iuc
date Thu, 25 Jan 2024 17:02:43 +0000
parents fe733f05c2f8
children
comparison
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3:b5407cc2bf51 4:12f0968f171c
1 1
2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martí =-= 2 =-= /home/pierre/miniconda3/envs/__recentrifuge@1.13.2/bin/rcf =-= v1.13.2 - Jan 2024 =-= by Jose Manuel Martí =-=
3 3
4 Centrifuge .out files to analyze: ['input_dir/centrifuge_out.out'] 4 Centrifuge .out files to analyze: ['input_dir/centrifuge_out.out']
5 Loading NCBI nodes... OK!  5 Loading NCBI nodes... OK! 
6 Loading NCBI names... OK!  6 Loading NCBI names... OK! 
7 Building dict of parent to children taxa... OK!  7 Building dict of parent to children taxa... OK! 
19  Check for more seqs lost ([in/ex]clude affects)...  19  Check for more seqs lost ([in/ex]clude affects)... 
20 Info: 10279 additional seqs discarded (99.276% of accepted) 20 Info: 10279 additional seqs discarded (99.276% of accepted)
21  21 
22 Warning! 210 orphan taxids (rerun with --debug for details) 22 Warning! 210 orphan taxids (rerun with --debug for details)
23 input_dir/centrifuge_out sample OK! 23 input_dir/centrifuge_out sample OK!
24 Load elapsed time: 0.0337 sec 24 Load elapsed time: 0.0232 sec
25  25 
26  26 
27 Building the taxonomy multiple tree... OK! 27 Building the taxonomy multiple tree... OK!
28 Generating csv extra output ([output.rcf.]*.csv)... OK! 28 Generating csv extra output ([output.rcf.]*.csv)... OK!
29 Total elapsed time: 00:00:00 29 Total elapsed time: 00:00:00