Mercurial > repos > iuc > recentrifuge
view test-data/centrifuge_test/test2_csv.log @ 5:76bf12b928f4 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit eb09ed848fff415c0ec5060aa23a39315f750503
| author | iuc |
|---|---|
| date | Mon, 26 Feb 2024 08:31:34 +0000 |
| parents | 12f0968f171c |
| children |
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=-= /home/pierre/miniconda3/envs/__recentrifuge@1.13.2/bin/rcf =-= v1.13.2 - Jan 2024 =-= by Jose Manuel Martà =-= [90mCentrifuge .out files to analyze:[0m ['input_dir/centrifuge_out.out'] [90mLoading NCBI nodes...[0m[92m OK! [0m [90mLoading NCBI names...[0m[92m OK! [0m [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m [90m Please, wait, processing files in parallel... [0m [90mLoading output file input_dir/centrifuge_out.out... [0m[92mOK! [0m[90m Seqs read: [0m10_999 [90m[[0m4.22 Mnt[90m] [0m[90m Seqs clas: [0m10_354 [90m([0m5.86%[90m unclassified) [0m[90m Seqs pass: [0m10_354 [90m([0m0.00%[90m rejected) [0m[90m Scores: min = [0m23.0[90m, max = [0m400.1[90m, avr = [0m190.7 [90m Length: min = [0m70 nt[90m, max = [0m602 nt[90m, avr = [0m387 nt [90m TaxIds: by classifier = [0m215[90m, by filter = [0m215 [90mBuilding from raw data with mintaxa = [0m4[90m ... [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m Info:[0m 10279 [90madditional seqs discarded ([0m99.276% [90mof accepted) [0m[93m Warning![0m 210 orphan taxids[90m (rerun with --debug for details) [0minput_dir/centrifuge_out[94m sample [0m[92mOK! [0m[90mLoad elapsed time: [0m0.0232[90m sec [0m [90m Building the taxonomy multiple tree... [0m[92mOK![0m [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m [90mTotal elapsed time:[0m 00:00:00