Mercurial > repos > iuc > recentrifuge
diff test-data/centrifuge_test/test2_csv.log @ 0:09b7b0b2e2c2 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
| author | iuc |
|---|---|
| date | Mon, 27 Jun 2022 11:03:22 +0000 |
| parents | |
| children | fe733f05c2f8 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/centrifuge_test/test2_csv.log Mon Jun 27 11:03:22 2022 +0000 @@ -0,0 +1,28 @@ + +=-= /home/pierre/anaconda3/envs/rcf/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= + +[90mLoading NCBI nodes...[0m[92m OK! [0m +[90mLoading NCBI names...[0m[92m OK! [0m +[90mBuilding dict of parent to children taxa...[0m[92m OK! [0m +[90m +Please, wait, processing files in parallel... +[0m +[90mLoading output file centrifuge.out... [0m[92mOK! +[0m[90m Seqs read: [0m10_999 [90m[[0m4.22 Mnt[90m] +[0m[90m Seqs clas: [0m10_354 [90m([0m5.86%[90m unclassified) +[0m[90m Seqs pass: [0m10_354 [90m([0m0.00%[90m rejected) +[0m[90m Scores: min = [0m23.0[90m, max = [0m400.1[90m, avr = [0m190.7 +[90m Length: min = [0m70 nt[90m, max = [0m602 nt[90m, avr = [0m387 nt +[90m TaxIds: by classifier = [0m215[90m, by filter = [0m215 +[90mBuilding from raw data with mintaxa = [0m4[90m ... +[0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m + Info:[0m 10279 [90madditional seqs discarded ([0m99.276% [90mof accepted) +[0m[93m + Warning![0m 210 orphan taxids[90m (rerun with --debug for details) +[0mcentrifuge[94m sample [0m[92mOK! +[0m[90mLoad elapsed time: [0m0.0305[90m sec +[0m +[90m +Building the taxonomy multiple tree... [0m[92mOK![0m +[90mGenerating csv extra output ([0m[95m[test2_csv.rcf.]*.csv[0m[90m)... [0m[92mOK![0m +[90mTotal elapsed time:[0m 00:00:00