Mercurial > repos > iuc > rgrnastar
view macros.xml @ 6:2055c2667eb3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 427913231c5894bde2b2ed428da2b8aee30bc311
author | iuc |
---|---|
date | Thu, 01 Mar 2018 11:56:28 -0500 |
parents | 318b2a9d54dd |
children | a70a7eebb435 |
line wrap: on
line source
<macros> <xml name="requirements"> <requirements> <requirement type="package" version="2.5.2b">star</requirement> <requirement type="package" version="0.1.19">samtools</requirement> </requirements> </xml> <token name="@FASTQ_GZ_OPTION@"> --readFilesCommand zcat </token> <xml name="citations"> <citations> <citation type="doi">10.1093/bioinformatics/bts635</citation> </citations> </xml> <xml name="@SJDBOPTIONS@"> <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/> <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/> </xml> </macros>