Mercurial > repos > iuc > rgrnastar
changeset 16:e132e7d02a3e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 9c34fd08b619a09028707a52c868d9be1ca02a6b"
| author | iuc |
|---|---|
| date | Fri, 04 Dec 2020 22:05:07 +0000 |
| parents | 5ec75f5dae3c |
| children | 7ed2edc1337f |
| files | macros.xml rg_rnaStar.xml |
| diffstat | 2 files changed, 16 insertions(+), 2 deletions(-) [+] |
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--- a/macros.xml Wed Aug 05 09:40:33 2020 -0400 +++ b/macros.xml Fri Dec 04 22:05:07 2020 +0000 @@ -5,7 +5,7 @@ the index versions in sync, but you should manually adjust the +galaxy version number. --> <!-- STAR version to be used --> - <token name="@VERSION@">2.7.5b</token> + <token name="@VERSION@">2.7.6a</token> <!-- STAR index version compatible with this version of STAR This is the STAR version that introduced the index structure expected by the current version. @@ -24,6 +24,16 @@ </requirements> </xml> + <xml name="edam"> + <edam_topics> + <edam_topic>topic_3170</edam_topic> + <edam_topic>topic_3308</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0292</edam_operation> + </edam_operations> + </xml> + <xml name="index_selection" token_with_gene_model="0"> <param argument="--genomeDir" name="genomeDir" type="select" label="Select reference genome"
--- a/rg_rnaStar.xml Wed Aug 05 09:40:33 2020 -0400 +++ b/rg_rnaStar.xml Fri Dec 04 22:05:07 2020 +0000 @@ -1,9 +1,13 @@ -<tool id="rna_star" name="RNA STAR" version="@VERSION@" profile="17.01"> +<tool id="rna_star" name="RNA STAR" version="@VERSION@" profile="20.01" license="MIT"> <description>Gapped-read mapper for RNA-seq data</description> + <xrefs> + <xref type="bio.tools">star</xref> + </xrefs> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> + <expand macro="edam"/> <expand macro="stdio" /> <!--