Mercurial > repos > iuc > rnaquast

annotate test-data/test_07_short_report.tab @ 5:f89e3c318453 draft

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planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
author iuc
date Wed, 07 Jun 2023 12:02:03 +0000
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5
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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1 METRICS/TRANSCRIPTS transcriptome01
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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2 Genes 1
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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3 Avg. number of exons per isoform 1.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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4 Transcripts 1
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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5 Transcripts > 500 bp 1
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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6 Transcripts > 1000 bp 1
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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7 Aligned 1
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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8 Uniquely aligned 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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9 Multiply aligned 1
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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10 Unaligned 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
parents:
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11 Avg. aligned fraction 1.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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12 Avg. alignment length 5369.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
parents:
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13 Avg. mismatches per transcript 0.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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14 Misassemblies 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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15 Database coverage 1.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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16 Duplication ratio 4.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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17 Relative database coverage 1.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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18 5000%-assembled genes 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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19 9500%-assembled genes 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
parents:
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20 5000%-covered genes 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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21 9500%-covered genes 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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22 5000%-assembled isoforms 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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23 9500%-assembled isoforms 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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24 5000%-covered isoforms 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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25 9500%-covered isoforms 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
parents:
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26 Mean isoform coverage 1.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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27 Mean isoform assembly 1.0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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28 5000%-matched 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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29 9500%-matched 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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30 Unannotated 0
f89e3c318453 planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit c633f5c634128e3c81ab48e94df6f703dd005c46
iuc
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31 Mean fraction of transcript matched 1.0