Mercurial > repos > iuc > roary
changeset 1:a9098353ae22 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/roary commit 0c61b60404e4e1dfb5be4fb2fd310f9f3606c7a6
| author | iuc |
|---|---|
| date | Thu, 06 Jul 2017 10:30:43 -0400 |
| parents | e02e9af2743f |
| children | f1ccc8a6eb05 |
| files | roary.xml |
| diffstat | 1 files changed, 4 insertions(+), 0 deletions(-) [+] |
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--- a/roary.xml Fri Jun 23 07:53:29 2017 -0400 +++ b/roary.xml Thu Jul 06 10:30:43 2017 -0400 @@ -44,6 +44,7 @@ <param name="core_diff" type="float" label="percentage of isolates a gene must be in to be core" help="The total percentage of the isolates that must have the gene for it to be considered a core gene." value="99.0"/> <param name="outputs" type="select" multiple="true" display="checkboxes" label="Additional outputs" help="Summary statistics, core gene alignments and Gene Presence/Absence tables are always produced."> + <option value="abg_nw">Accessory binary genes in newick format</option> <option value="abg_fa">Accessory binary genes in fasta format</option> <option value="accgraph">Accessory graph in dot format</option> <option value="acchead_embl">Accessory header file in embl format</option> @@ -76,6 +77,9 @@ <data format="fasta" name="acc_bin" label="${tool.name} on ${on_string} Accessory Binary Genes" from_work_dir="out/accessory_binary_genes.fa" > <filter>outputs and 'abg_fa' in outputs</filter> </data> + <data format="nhx" name="acc_bin_new" label="${tool.name} on ${on_string} Accessory Binary Genes (Newick)" from_work_dir="out/accessory_binary_genes.fa.newick" > + <filter>outputs and 'abg_nw' in outputs</filter> + </data> <data format="dot" name="acc_graph" label="${tool.name} on ${on_string} Acsessory Graph" from_work_dir="out/accessory_graph.dot"> <filter>outputs and 'accgraph' in outputs</filter> </data>