Mercurial > repos > iuc > salsa
changeset 0:575b4d5bd444 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/salsa2 commit 67cd735c6709a56ad1c4d65cd84e38fccd59603b"
| author | iuc |
|---|---|
| date | Sun, 17 Jan 2021 13:24:22 +0000 |
| parents | |
| children | ba7b0f11e470 |
| files | salsa2.xml test-data/out.agp test-data/out.fasta test-data/test.bed test-data/test.fai test-data/test.fasta test-data/test.gfa1 |
| diffstat | 7 files changed, 488 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/salsa2.xml Sun Jan 17 13:24:22 2021 +0000 @@ -0,0 +1,84 @@ +<tool id="salsa" name="SALSA" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> + <description>scaffold long read assemblies with Hi-C</description> + <xrefs> + <xref type="bio.tools">SALSA</xref> + </xrefs> + <macros> + <token name="@TOOL_VERSION@">2.2</token> + <token name="@VERSION_SUFFIX@">0</token> + </macros> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">salsa2</requirement> + <requirement type="package" version="1.11">samtools</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ +ln -s '$fasta_in' input.fasta && +samtools faidx input.fasta && + +run_pipeline.py +-a '$fasta_in' +-l input.fasta.fai +-b '$bed_file' +-e '$enzyme' + +#if str($cutoff): + -c '$cutoff' +#end if +#if $gfa_file: + -g '$gfa_file' +#end if +#if $iter: + -i '$iter' +#end if +-o ./out + ]]></command> + <inputs> + <param name="fasta_in" type="data" format="fasta" label="Initial assembly file" help="Headers must not contain ':'."/> + <param name="bed_file" type="data" format="bed" label="Bed alignment" help="Sorted by read names"/> + <param name="cutoff" argument="-c" type="integer" min="1" label="Cutoff" optional="true" help="Minimum contig length to scaffold."/> + <param name="gfa_file" argument="-g" type="data" format="gfa1,gfa2" optional="true" label="Sequence graphs" help="Sequence graphs encoded in GFA format."/> + <param name="enzyme" argument="-e" type="text" label="Restriction enzyme sequence(s)" + help="Restriction enzyme sequence. If multiple were used, include all as a comma separated list without spaces (ex. 'GATC,AAGCTT')."> + <validator type="expression" message="Only alphabetical letters and the comma can be used in to define restriction enzym sequences.">value.replace(',', '').isalpha()</validator> + </param> + <param name="iter" argument="-i" type="integer" min="0" label="Iterations" optional="true" help="Number of iterations to run"/> + </inputs> + <outputs> + <data name="scaffolds_fasta" format="fasta" from_work_dir="out/scaffolds_FINAL.fasta" label="${tool.name} on ${on_string}: FASTA assembly"/> + <data name="scaffolds_agp" format="tabular" from_work_dir="out/scaffolds_FINAL.agp" label="${tool.name} on ${on_string}: agp output"/> + </outputs> + <tests> + <test> + <param name="fasta_in" value="test.fasta"/> + <param name="length" value="test.fai"/> + <param name="bed_file" value="test.bed"/> + <param name="gfa_file" value="test.gfa1"/> + <param name="enzyme" value="GATC,GANTC"/> + <param name="cutoff" value="1000"/> + <param name="iter" value="3"/> + <output name="scaffolds_fasta" file="out.fasta"/> + <output name="scaffolds_agp" file="out.agp"/> + </test> + <test> + <param name="fasta_in" value="test.fasta"/> + <param name="bed_file" value="test.bed"/> + <param name="gfa_file" value="test.gfa1"/> + <param name="enzyme" value="GATC,GANTC"/> + <param name="cutoff" value="1000"/> + <param name="iter" value="3"/> + <output name="scaffolds_fasta" file="out.fasta"/> + <output name="scaffolds_agp" file="out.agp"/> + </test> + </tests> + <help><![CDATA[ +**What is does** + +SALSA (Simple AssembLy ScAffolder) is a scaffolding tool based on a computational method that exploits the genomic proximity +information in Hi-C data sets for long range scaffolding of de novo genome assemblies. + + ]]></help> + <citations> + <citation type="doi">10.1101/261149</citation> + <citation type="doi">10.1186/s12864-017-3879-z</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out.agp Sun Jan 17 13:24:22 2021 +0000 @@ -0,0 +1,1 @@ +scaffold_1 1 7920 1 W HiC_scaffold_1 1 7920 +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out.fasta Sun Jan 17 13:24:22 2021 +0000 @@ -0,0 +1,100 @@ +>scaffold_1 +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAAATCTGGTGAAGCTTTCTGCATGTGATGT +GCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACA +CTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGA +CGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGC +CATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCAC +TGTGTCTCCGTGCCGAGCTAGATCTCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGC +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCTGGCATTGTAGGTACCAGACACTAACAAACTCGTCGT +CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT +GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA +CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC +CTTACGGCTAGGGGAGATCTAGCTCGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT +TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC +ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTGCCTTACGGCTAGGGGAGATCT +AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA +CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC +ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG +TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG +CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT +CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT +GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA +CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC +CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT +TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC +ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT +AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA +CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC +ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG +TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG +CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT +CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT +GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA +CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC +CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT +TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC +ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT +AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA +CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC +ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG +TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG +CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.bed Sun Jan 17 13:24:22 2021 +0000 @@ -0,0 +1,65 @@ +chr1 147962192 147962580 CCDS989.1_cds_0_0_chr1_147962193_r 0 - +chr1 147984545 147984630 CCDS990.1_cds_0_0_chr1_147984546_f 0 + +chr1 148078400 148078582 CCDS993.1_cds_0_0_chr1_148078401_r 0 - +chr1 148185136 148185276 CCDS996.1_cds_0_0_chr1_148185137_f 0 + +chr10 55251623 55253124 CCDS7248.1_cds_0_0_chr10_55251624_r 0 - +chr11 116124407 116124501 CCDS8374.1_cds_0_0_chr11_116124408_r 0 - +chr11 116206508 116206563 CCDS8377.1_cds_0_0_chr11_116206509_f 0 + +chr11 116211733 116212337 CCDS8378.1_cds_0_0_chr11_116211734_r 0 - +chr11 1812377 1812407 CCDS7726.1_cds_0_0_chr11_1812378_f 0 + +chr12 38440094 38440321 CCDS8736.1_cds_0_0_chr12_38440095_r 0 - +chr13 112381694 112381953 CCDS9526.1_cds_0_0_chr13_112381695_f 0 + +chr14 98710240 98712285 CCDS9949.1_cds_0_0_chr14_98710241_r 0 - +chr15 41486872 41487060 CCDS10096.1_cds_0_0_chr15_41486873_r 0 - +chr15 41673708 41673857 CCDS10097.1_cds_0_0_chr15_41673709_f 0 + +chr15 41679161 41679250 CCDS10098.1_cds_0_0_chr15_41679162_r 0 - +chr15 41826029 41826196 CCDS10101.1_cds_0_0_chr15_41826030_f 0 + +chr16 142908 143003 CCDS10397.1_cds_0_0_chr16_142909_f 0 + +chr16 179963 180135 CCDS10401.1_cds_0_0_chr16_179964_r 0 - +chr16 244413 244681 CCDS10402.1_cds_0_0_chr16_244414_f 0 + +chr16 259268 259383 CCDS10403.1_cds_0_0_chr16_259269_r 0 - +chr18 23786114 23786321 CCDS11891.1_cds_0_0_chr18_23786115_r 0 - +chr18 59406881 59407046 CCDS11985.1_cds_0_0_chr18_59406882_f 0 + +chr18 59455932 59456337 CCDS11986.1_cds_0_0_chr18_59455933_r 0 - +chr18 59600586 59600754 CCDS11988.1_cds_0_0_chr18_59600587_f 0 + +chr19 59068595 59069564 CCDS12866.1_cds_0_0_chr19_59068596_f 0 + +chr19 59236026 59236146 CCDS12872.1_cds_0_0_chr19_59236027_r 0 - +chr19 59297998 59298008 CCDS12877.1_cds_0_0_chr19_59297999_f 0 + +chr19 59302168 59302288 CCDS12878.1_cds_0_0_chr19_59302169_r 0 - +chr2 118288583 118288668 CCDS2120.1_cds_0_0_chr2_118288584_f 0 + +chr2 118394148 118394202 CCDS2121.1_cds_0_0_chr2_118394149_r 0 - +chr2 220190202 220190242 CCDS2441.1_cds_0_0_chr2_220190203_f 0 + +chr2 220229609 220230869 CCDS2443.1_cds_0_0_chr2_220229610_r 0 - +chr20 33330413 33330423 CCDS13249.1_cds_0_0_chr20_33330414_r 0 - +chr20 33513606 33513792 CCDS13255.1_cds_0_0_chr20_33513607_f 0 + +chr20 33579500 33579527 CCDS13256.1_cds_0_0_chr20_33579501_r 0 - +chr20 33593260 33593348 CCDS13257.1_cds_0_0_chr20_33593261_f 0 + +chr21 32707032 32707192 CCDS13614.1_cds_0_0_chr21_32707033_f 0 + +chr21 32869641 32870022 CCDS13615.1_cds_0_0_chr21_32869642_r 0 - +chr21 33321040 33322012 CCDS13620.1_cds_0_0_chr21_33321041_f 0 + +chr21 33744994 33745040 CCDS13625.1_cds_0_0_chr21_33744995_r 0 - +chr22 30120223 30120265 CCDS13897.1_cds_0_0_chr22_30120224_f 0 + +chr22 30160419 30160661 CCDS13898.1_cds_0_0_chr22_30160420_r 0 - +chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 + +chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 - +chr5 131424298 131424460 CCDS4149.1_cds_0_0_chr5_131424299_f 0 + +chr5 131556601 131556672 CCDS4151.1_cds_0_0_chr5_131556602_r 0 - +chr5 131621326 131621419 CCDS4152.1_cds_0_0_chr5_131621327_f 0 + +chr5 131847541 131847666 CCDS4155.1_cds_0_0_chr5_131847542_r 0 - +chr6 108299600 108299744 CCDS5061.1_cds_0_0_chr6_108299601_r 0 - +chr6 108594662 108594687 CCDS5063.1_cds_0_0_chr6_108594663_f 0 + +chr6 108640045 108640151 CCDS5064.1_cds_0_0_chr6_108640046_r 0 - +chr6 108722976 108723115 CCDS5067.1_cds_0_0_chr6_108722977_f 0 + +chr7 113660517 113660685 CCDS5760.1_cds_0_0_chr7_113660518_f 0 + +chr7 116512159 116512389 CCDS5771.1_cds_0_0_chr7_116512160_r 0 - +chr7 116714099 116714152 CCDS5773.1_cds_0_0_chr7_116714100_f 0 + +chr7 116945541 116945787 CCDS5774.1_cds_0_0_chr7_116945542_r 0 - +chr8 118881131 118881317 CCDS6324.1_cds_0_0_chr8_118881132_r 0 - +chr9 128764156 128764189 CCDS6914.1_cds_0_0_chr9_128764157_f 0 + +chr9 128787519 128789136 CCDS6915.1_cds_0_0_chr9_128787520_r 0 - +chr9 128882427 128882523 CCDS6917.1_cds_0_0_chr9_128882428_f 0 + +chr9 128937229 128937445 CCDS6919.1_cds_0_0_chr9_128937230_r 0 - +chrX 122745047 122745924 CCDS14606.1_cds_0_0_chrX_122745048_f 0 + +chrX 152648964 152649196 CCDS14733.1_cds_0_0_chrX_152648965_r 0 - +chrX 152691446 152691471 CCDS14735.1_cds_0_0_chrX_152691447_f 0 + +chrX 152694029 152694263 CCDS14736.1_cds_0_0_chrX_152694030_r 0 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.fai Sun Jan 17 13:24:22 2021 +0000 @@ -0,0 +1,1 @@ +HiC_scaffold_1 399920 16 80 81
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.fasta Sun Jan 17 13:24:22 2021 +0000 @@ -0,0 +1,100 @@ +>HiC_scaffold_1 +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAAATCTGGTGAAGCTTTCTGCATGTGATGT +GCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACA +CTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGA +CGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGC +CATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCAC +TGTGTCTCCGTGCCGAGCTAGATCTCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG +CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGC +ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG +CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC +TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC +GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC +ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT +GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG +TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG +TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG +ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA +AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCTGGCATTGTAGGTACCAGACACTAACAAACTCGTCGT +CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT +GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA +CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC +CTTACGGCTAGGGGAGATCTAGCTCGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT +TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC +ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTGCCTTACGGCTAGGGGAGATCT +AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA +CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC +ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG +TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG +CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT +CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT +GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA +CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC +CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT +TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC +ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT +AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA +CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC +ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG +TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG +CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT +CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT +GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA +CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC +CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT +TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC +ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT +AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA +CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC +ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG +TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG +CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.gfa1 Sun Jan 17 13:24:22 2021 +0000 @@ -0,0 +1,137 @@ +# Downloaded from https://github.com/sjackman/gfalint/blob/master/examples/big1.gfa +H VN:Z:1.0 +S 3 * LN:i:5376 KC:i:485841 +S 5 * LN:i:124 KC:i:6306 +S 7 * LN:i:3602 KC:i:327981 +S 8 * LN:i:52 KC:i:2218 +S 9 * LN:i:48 KC:i:154 +S 10 * LN:i:144 KC:i:4604 +S 11 * LN:i:6491 KC:i:611916 +S 13 * LN:i:10648 KC:i:1023627 +S 14 * LN:i:48 KC:i:16 +S 15 * LN:i:5930 KC:i:599587 +S 17 * LN:i:9404 KC:i:991226 +S 18 * LN:i:2206 KC:i:240150 +S 19 * LN:i:893 KC:i:82277 +S 20 * LN:i:12201 KC:i:1351219 +S 21 * LN:i:49 KC:i:300 +S 22 * LN:i:11669 KC:i:1131776 +S 23 * LN:i:7665 KC:i:766424 +S 27 * LN:i:48 KC:i:35 +S 28 * LN:i:1597 KC:i:142681 +S 30 * LN:i:48 KC:i:7874 +S 31 * LN:i:94 KC:i:805 +S 32 * LN:i:3065 KC:i:275287 +S 33 * LN:i:70 KC:i:5123 +S 34 * LN:i:49 KC:i:23 +S 36 * LN:i:12335 KC:i:1315304 +S 37 * LN:i:130 KC:i:5258 +S 38 * LN:i:4516 KC:i:440430 +S 39 * LN:i:59 KC:i:4094 +S 41 * LN:i:215 KC:i:11423 +S 42 * LN:i:146 KC:i:3161 +S 43 * LN:i:50 KC:i:563 +S 44 * LN:i:3913 KC:i:434585 +S 46 * LN:i:2710 KC:i:268203 +S 47 * LN:i:49 KC:i:200 +S 49 * LN:i:61 KC:i:3442 +S 50 * LN:i:5010 KC:i:532820 +S 51 * LN:i:9644 KC:i:950549 +S 52 * LN:i:417 KC:i:16750 +S 54 * LN:i:50 KC:i:600 +S 55 * LN:i:69 KC:i:11532 +S 56 * LN:i:1550 KC:i:141042 +S 57 * LN:i:346 KC:i:12512 +S 58 * LN:i:3825 KC:i:349334 +S 59 * LN:i:11508 KC:i:1237494 +S 60 * LN:i:720 KC:i:72448 +S 61 * LN:i:1086 KC:i:83405 +S 62 * LN:i:4818 KC:i:464490 +S 63 * LN:i:8207 KC:i:822244 +S 65 * LN:i:67 KC:i:2088 +S 66 * LN:i:4375 KC:i:421128 +S 67 * LN:i:5063 KC:i:530425 +S 68 * LN:i:78 KC:i:10057 +S 69 * LN:i:10204 KC:i:1039066 +S 71 * LN:i:789 KC:i:65350 +S 72 * LN:i:95 KC:i:6170 +S 73 * LN:i:48 KC:i:14 +S 76 * LN:i:54 KC:i:1373 +S 77 * LN:i:4167 KC:i:460259 +S 78 * LN:i:49 KC:i:925 +S 79 * LN:i:95 KC:i:5402 +S 83 * LN:i:15015 KC:i:1487985 +S 84 * LN:i:9811 KC:i:1021233 +S 85 * LN:i:3483 KC:i:365113 +S 86 * LN:i:7953 KC:i:722908 +L 3 + 65 - 47M +L 3 - 76 - 47M +L 5 + 47 - 47M +L 5 - 22 - 47M +L 5 - 32 + 47M +L 7 + 49 - 47M +L 8 + 33 - 47M +L 8 + 55 - 36M +L 8 - 78 + 47M +L 8 - 79 + 47M +L 9 + 37 - 47M +L 9 + 47 + 46M +L 9 - 67 - 47M +L 9 - 69 - 47M +L 10 + 47 + 47M +L 11 - 43 - 47M +L 14 + 30 + 47M +L 14 + 31 + 47M +L 14 + 73 - 47M +L 17 + 21 - 47M +L 18 + 78 - 47M +L 19 + 76 + 47M +L 19 - 76 - 47M +L 20 - 76 + 47M +L 21 + 51 - 47M +L 21 - 32 - 47M +L 21 - 66 + 47M +L 22 + 63 + 47M +L 23 + 68 - 47M +L 27 + 30 + 47M +L 27 + 31 + 47M +L 27 + 73 - 47M +L 27 - 31 - 47M +L 27 - 83 + 47M +L 28 + 43 + 47M +L 30 + 30 + 47M +L 30 + 31 + 47M +L 30 + 73 - 47M +L 30 - 34 - 47M +L 31 - 34 - 47M +L 32 - 63 + 47M +L 33 + 72 - 47M +L 33 - 44 - 47M +L 33 - 55 - 16M +L 34 + 73 - 47M +L 36 - 63 - 47M +L 36 - 85 + 47M +L 37 - 49 + 47M +L 39 + 56 + 47M +L 39 + 67 + 47M +L 39 - 71 - 47M +L 39 - 65 + 14M +L 41 + 43 + 47M +L 42 + 65 - 47M +L 43 + 60 + 47M +L 47 + 59 + 47M +L 49 + 71 + 47M +L 49 - 84 + 47M +L 52 - 65 + 47M +L 54 + 77 - 47M +L 54 + 54 + 46M +L 54 - 58 - 47M +L 55 + 72 - 36M +L 55 - 79 - 47M +L 55 - 78 - 44M +L 57 + 63 - 47M +L 57 + 85 + 47M +L 61 + 68 + 47M +L 68 + 68 + 26M +L 72 - 78 + 47M +L 72 - 79 + 47M