changeset 0:575b4d5bd444 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/salsa2 commit 67cd735c6709a56ad1c4d65cd84e38fccd59603b"
author iuc
date Sun, 17 Jan 2021 13:24:22 +0000 (2021-01-17)
parents
children ba7b0f11e470
files salsa2.xml test-data/out.agp test-data/out.fasta test-data/test.bed test-data/test.fai test-data/test.fasta test-data/test.gfa1
diffstat 7 files changed, 488 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/salsa2.xml	Sun Jan 17 13:24:22 2021 +0000
@@ -0,0 +1,84 @@
+<tool id="salsa" name="SALSA" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
+    <description>scaffold long read assemblies with Hi-C</description>
+    <xrefs>
+        <xref type="bio.tools">SALSA</xref>
+    </xrefs>
+    <macros>
+        <token name="@TOOL_VERSION@">2.2</token>
+        <token name="@VERSION_SUFFIX@">0</token>
+    </macros>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">salsa2</requirement>
+        <requirement type="package" version="1.11">samtools</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+ln -s '$fasta_in' input.fasta &&
+samtools faidx input.fasta &&
+
+run_pipeline.py
+-a '$fasta_in'
+-l input.fasta.fai
+-b '$bed_file'
+-e '$enzyme'
+
+#if str($cutoff):
+    -c '$cutoff'
+#end if
+#if $gfa_file:
+    -g '$gfa_file'
+#end if
+#if $iter:
+    -i '$iter'
+#end if
+-o ./out
+    ]]></command>
+    <inputs>
+        <param name="fasta_in" type="data" format="fasta" label="Initial assembly file" help="Headers must not contain ':'."/>
+        <param name="bed_file" type="data" format="bed" label="Bed alignment" help="Sorted by read names"/>
+        <param name="cutoff" argument="-c" type="integer" min="1" label="Cutoff" optional="true" help="Minimum contig length to scaffold."/>
+        <param name="gfa_file" argument="-g" type="data" format="gfa1,gfa2" optional="true" label="Sequence graphs" help="Sequence graphs encoded in GFA format."/>
+        <param name="enzyme" argument="-e" type="text" label="Restriction enzyme sequence(s)"
+               help="Restriction enzyme sequence. If multiple were used, include all as a comma separated list without spaces (ex. 'GATC,AAGCTT').">
+            <validator type="expression" message="Only alphabetical letters and the comma can be used in to define restriction enzym sequences.">value.replace(',', '').isalpha()</validator>
+        </param>
+        <param name="iter" argument="-i" type="integer" min="0" label="Iterations" optional="true" help="Number of iterations to run"/>
+    </inputs>
+    <outputs>
+        <data name="scaffolds_fasta" format="fasta" from_work_dir="out/scaffolds_FINAL.fasta" label="${tool.name} on ${on_string}: FASTA assembly"/>
+        <data name="scaffolds_agp" format="tabular" from_work_dir="out/scaffolds_FINAL.agp" label="${tool.name} on ${on_string}: agp output"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="fasta_in" value="test.fasta"/>
+            <param name="length" value="test.fai"/>
+            <param name="bed_file" value="test.bed"/>
+            <param name="gfa_file" value="test.gfa1"/>
+            <param name="enzyme" value="GATC,GANTC"/> 
+            <param name="cutoff" value="1000"/>
+            <param name="iter" value="3"/>
+            <output name="scaffolds_fasta" file="out.fasta"/>
+            <output name="scaffolds_agp" file="out.agp"/>
+        </test>
+        <test>
+            <param name="fasta_in" value="test.fasta"/>
+            <param name="bed_file" value="test.bed"/>
+            <param name="gfa_file" value="test.gfa1"/>
+            <param name="enzyme" value="GATC,GANTC"/> 
+            <param name="cutoff" value="1000"/>
+            <param name="iter" value="3"/>
+            <output name="scaffolds_fasta" file="out.fasta"/>
+            <output name="scaffolds_agp" file="out.agp"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What is does**
+
+SALSA (Simple AssembLy ScAffolder) is a scaffolding tool based on a computational method that exploits the genomic proximity
+information in Hi-C data sets for long range scaffolding of de novo genome assemblies.
+
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1101/261149</citation>
+        <citation type="doi">10.1186/s12864-017-3879-z</citation>
+    </citations>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.agp	Sun Jan 17 13:24:22 2021 +0000
@@ -0,0 +1,1 @@
+scaffold_1	1	7920	1	W	HiC_scaffold_1	1	7920	+	
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.fasta	Sun Jan 17 13:24:22 2021 +0000
@@ -0,0 +1,100 @@
+>scaffold_1
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAAATCTGGTGAAGCTTTCTGCATGTGATGT
+GCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACA
+CTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGA
+CGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGC
+CATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCAC
+TGTGTCTCCGTGCCGAGCTAGATCTCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGC
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCTGGCATTGTAGGTACCAGACACTAACAAACTCGTCGT
+CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT
+GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA
+CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC
+CTTACGGCTAGGGGAGATCTAGCTCGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT
+TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC
+ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTGCCTTACGGCTAGGGGAGATCT
+AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA
+CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC
+ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG
+TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG
+CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
+CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT
+GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA
+CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC
+CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT
+TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC
+ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT
+AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA
+CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC
+ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG
+TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG
+CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
+CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT
+GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA
+CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC
+CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT
+TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC
+ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT
+AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA
+CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC
+ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG
+TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG
+CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.bed	Sun Jan 17 13:24:22 2021 +0000
@@ -0,0 +1,65 @@
+chr1	147962192	147962580	CCDS989.1_cds_0_0_chr1_147962193_r	0	-
+chr1	147984545	147984630	CCDS990.1_cds_0_0_chr1_147984546_f	0	+
+chr1	148078400	148078582	CCDS993.1_cds_0_0_chr1_148078401_r	0	-
+chr1	148185136	148185276	CCDS996.1_cds_0_0_chr1_148185137_f	0	+
+chr10	55251623	55253124	CCDS7248.1_cds_0_0_chr10_55251624_r	0	-
+chr11	116124407	116124501	CCDS8374.1_cds_0_0_chr11_116124408_r	0	-
+chr11	116206508	116206563	CCDS8377.1_cds_0_0_chr11_116206509_f	0	+
+chr11	116211733	116212337	CCDS8378.1_cds_0_0_chr11_116211734_r	0	-
+chr11	1812377	1812407	CCDS7726.1_cds_0_0_chr11_1812378_f	0	+
+chr12	38440094	38440321	CCDS8736.1_cds_0_0_chr12_38440095_r	0	-
+chr13	112381694	112381953	CCDS9526.1_cds_0_0_chr13_112381695_f	0	+
+chr14	98710240	98712285	CCDS9949.1_cds_0_0_chr14_98710241_r	0	-
+chr15	41486872	41487060	CCDS10096.1_cds_0_0_chr15_41486873_r	0	-
+chr15	41673708	41673857	CCDS10097.1_cds_0_0_chr15_41673709_f	0	+
+chr15	41679161	41679250	CCDS10098.1_cds_0_0_chr15_41679162_r	0	-
+chr15	41826029	41826196	CCDS10101.1_cds_0_0_chr15_41826030_f	0	+
+chr16	142908	143003	CCDS10397.1_cds_0_0_chr16_142909_f	0	+
+chr16	179963	180135	CCDS10401.1_cds_0_0_chr16_179964_r	0	-
+chr16	244413	244681	CCDS10402.1_cds_0_0_chr16_244414_f	0	+
+chr16	259268	259383	CCDS10403.1_cds_0_0_chr16_259269_r	0	-
+chr18	23786114	23786321	CCDS11891.1_cds_0_0_chr18_23786115_r	0	-
+chr18	59406881	59407046	CCDS11985.1_cds_0_0_chr18_59406882_f	0	+
+chr18	59455932	59456337	CCDS11986.1_cds_0_0_chr18_59455933_r	0	-
+chr18	59600586	59600754	CCDS11988.1_cds_0_0_chr18_59600587_f	0	+
+chr19	59068595	59069564	CCDS12866.1_cds_0_0_chr19_59068596_f	0	+
+chr19	59236026	59236146	CCDS12872.1_cds_0_0_chr19_59236027_r	0	-
+chr19	59297998	59298008	CCDS12877.1_cds_0_0_chr19_59297999_f	0	+
+chr19	59302168	59302288	CCDS12878.1_cds_0_0_chr19_59302169_r	0	-
+chr2	118288583	118288668	CCDS2120.1_cds_0_0_chr2_118288584_f	0	+
+chr2	118394148	118394202	CCDS2121.1_cds_0_0_chr2_118394149_r	0	-
+chr2	220190202	220190242	CCDS2441.1_cds_0_0_chr2_220190203_f	0	+
+chr2	220229609	220230869	CCDS2443.1_cds_0_0_chr2_220229610_r	0	-
+chr20	33330413	33330423	CCDS13249.1_cds_0_0_chr20_33330414_r	0	-
+chr20	33513606	33513792	CCDS13255.1_cds_0_0_chr20_33513607_f	0	+
+chr20	33579500	33579527	CCDS13256.1_cds_0_0_chr20_33579501_r	0	-
+chr20	33593260	33593348	CCDS13257.1_cds_0_0_chr20_33593261_f	0	+
+chr21	32707032	32707192	CCDS13614.1_cds_0_0_chr21_32707033_f	0	+
+chr21	32869641	32870022	CCDS13615.1_cds_0_0_chr21_32869642_r	0	-
+chr21	33321040	33322012	CCDS13620.1_cds_0_0_chr21_33321041_f	0	+
+chr21	33744994	33745040	CCDS13625.1_cds_0_0_chr21_33744995_r	0	-
+chr22	30120223	30120265	CCDS13897.1_cds_0_0_chr22_30120224_f	0	+
+chr22	30160419	30160661	CCDS13898.1_cds_0_0_chr22_30160420_r	0	-
+chr22	30665273	30665360	CCDS13901.1_cds_0_0_chr22_30665274_f	0	+
+chr22	30939054	30939266	CCDS13903.1_cds_0_0_chr22_30939055_r	0	-
+chr5	131424298	131424460	CCDS4149.1_cds_0_0_chr5_131424299_f	0	+
+chr5	131556601	131556672	CCDS4151.1_cds_0_0_chr5_131556602_r	0	-
+chr5	131621326	131621419	CCDS4152.1_cds_0_0_chr5_131621327_f	0	+
+chr5	131847541	131847666	CCDS4155.1_cds_0_0_chr5_131847542_r	0	-
+chr6	108299600	108299744	CCDS5061.1_cds_0_0_chr6_108299601_r	0	-
+chr6	108594662	108594687	CCDS5063.1_cds_0_0_chr6_108594663_f	0	+
+chr6	108640045	108640151	CCDS5064.1_cds_0_0_chr6_108640046_r	0	-
+chr6	108722976	108723115	CCDS5067.1_cds_0_0_chr6_108722977_f	0	+
+chr7	113660517	113660685	CCDS5760.1_cds_0_0_chr7_113660518_f	0	+
+chr7	116512159	116512389	CCDS5771.1_cds_0_0_chr7_116512160_r	0	-
+chr7	116714099	116714152	CCDS5773.1_cds_0_0_chr7_116714100_f	0	+
+chr7	116945541	116945787	CCDS5774.1_cds_0_0_chr7_116945542_r	0	-
+chr8	118881131	118881317	CCDS6324.1_cds_0_0_chr8_118881132_r	0	-
+chr9	128764156	128764189	CCDS6914.1_cds_0_0_chr9_128764157_f	0	+
+chr9	128787519	128789136	CCDS6915.1_cds_0_0_chr9_128787520_r	0	-
+chr9	128882427	128882523	CCDS6917.1_cds_0_0_chr9_128882428_f	0	+
+chr9	128937229	128937445	CCDS6919.1_cds_0_0_chr9_128937230_r	0	-
+chrX	122745047	122745924	CCDS14606.1_cds_0_0_chrX_122745048_f	0	+
+chrX	152648964	152649196	CCDS14733.1_cds_0_0_chrX_152648965_r	0	-
+chrX	152691446	152691471	CCDS14735.1_cds_0_0_chrX_152691447_f	0	+
+chrX	152694029	152694263	CCDS14736.1_cds_0_0_chrX_152694030_r	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.fai	Sun Jan 17 13:24:22 2021 +0000
@@ -0,0 +1,1 @@
+HiC_scaffold_1	399920	16	80	81
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.fasta	Sun Jan 17 13:24:22 2021 +0000
@@ -0,0 +1,100 @@
+>HiC_scaffold_1
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAAATCTGGTGAAGCTTTCTGCATGTGATGT
+GCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACA
+CTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGA
+CGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGC
+CATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCAC
+TGTGTCTCCGTGCCGAGCTAGATCTCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGT
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGAGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAG
+CAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGC
+ACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTG
+CCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACAC
+TTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGAC
+GACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCC
+ATCGCATTGTGTCTGGTGTGTAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACT
+GTGTCTCCGTGCCGTGCTAGATCTCCCCTAGCCGTAAGGTACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGG
+TATGTGTCATAATCTGGTGAAGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCGCATTGTGTCTGGTGTG
+TAGGTACCCAGACACTTAAGCAAACTCGATCGTTGTACACTTTGATGGGCAACCATCACTGTGTCTCCGTGCCGTGCTAG
+ATCTCCCCTAGCCGTAAGGCACTTTGAACGCCCCTTCGACGACGAGTTACAAGAGTGTGGTATGTGTCATAATCTGGTGA
+AGCTTTCTGCATGTGATGTGCCTTGTGTGGATCCGTGGCCATCTGGCATTGTAGGTACCAGACACTAACAAACTCGTCGT
+CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT
+GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA
+CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC
+CTTACGGCTAGGGGAGATCTAGCTCGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT
+TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC
+ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTGCCTTACGGCTAGGGGAGATCT
+AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA
+CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC
+ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG
+TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG
+CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
+CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT
+GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA
+CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC
+CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT
+TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC
+ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT
+AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA
+CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC
+ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG
+TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG
+CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
+CGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGT
+GTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCA
+CATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTAC
+CTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCT
+TAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTC
+ACCAGATTATGACACATACCACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCT
+AGCACGGCACGGAGACACAGTGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACA
+CACCAGACACAATGCGATGGCCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACC
+ACACTCTTGTAACTCGTCGTCGAAGGGGCGTTCAAAGTACCTTACGGCTAGGGGAGATCTAGCACGGCACGGAGACACAG
+TGATGGTTGCCCATCAAAGTGTACAACGATCGAGTTTGCTTAAGTGTCTGGGTACCTACACACCAGACACAATGCGATGG
+CCACGGATCCACACAAGGCACATCACATGCAGAAAGCTTCACCAGATTATGACACATACCACACTCTTGTAACTCGTCGT
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.gfa1	Sun Jan 17 13:24:22 2021 +0000
@@ -0,0 +1,137 @@
+# Downloaded from https://github.com/sjackman/gfalint/blob/master/examples/big1.gfa
+H	VN:Z:1.0
+S	3	*	LN:i:5376	KC:i:485841
+S	5	*	LN:i:124	KC:i:6306
+S	7	*	LN:i:3602	KC:i:327981
+S	8	*	LN:i:52	KC:i:2218
+S	9	*	LN:i:48	KC:i:154
+S	10	*	LN:i:144	KC:i:4604
+S	11	*	LN:i:6491	KC:i:611916
+S	13	*	LN:i:10648	KC:i:1023627
+S	14	*	LN:i:48	KC:i:16
+S	15	*	LN:i:5930	KC:i:599587
+S	17	*	LN:i:9404	KC:i:991226
+S	18	*	LN:i:2206	KC:i:240150
+S	19	*	LN:i:893	KC:i:82277
+S	20	*	LN:i:12201	KC:i:1351219
+S	21	*	LN:i:49	KC:i:300
+S	22	*	LN:i:11669	KC:i:1131776
+S	23	*	LN:i:7665	KC:i:766424
+S	27	*	LN:i:48	KC:i:35
+S	28	*	LN:i:1597	KC:i:142681
+S	30	*	LN:i:48	KC:i:7874
+S	31	*	LN:i:94	KC:i:805
+S	32	*	LN:i:3065	KC:i:275287
+S	33	*	LN:i:70	KC:i:5123
+S	34	*	LN:i:49	KC:i:23
+S	36	*	LN:i:12335	KC:i:1315304
+S	37	*	LN:i:130	KC:i:5258
+S	38	*	LN:i:4516	KC:i:440430
+S	39	*	LN:i:59	KC:i:4094
+S	41	*	LN:i:215	KC:i:11423
+S	42	*	LN:i:146	KC:i:3161
+S	43	*	LN:i:50	KC:i:563
+S	44	*	LN:i:3913	KC:i:434585
+S	46	*	LN:i:2710	KC:i:268203
+S	47	*	LN:i:49	KC:i:200
+S	49	*	LN:i:61	KC:i:3442
+S	50	*	LN:i:5010	KC:i:532820
+S	51	*	LN:i:9644	KC:i:950549
+S	52	*	LN:i:417	KC:i:16750
+S	54	*	LN:i:50	KC:i:600
+S	55	*	LN:i:69	KC:i:11532
+S	56	*	LN:i:1550	KC:i:141042
+S	57	*	LN:i:346	KC:i:12512
+S	58	*	LN:i:3825	KC:i:349334
+S	59	*	LN:i:11508	KC:i:1237494
+S	60	*	LN:i:720	KC:i:72448
+S	61	*	LN:i:1086	KC:i:83405
+S	62	*	LN:i:4818	KC:i:464490
+S	63	*	LN:i:8207	KC:i:822244
+S	65	*	LN:i:67	KC:i:2088
+S	66	*	LN:i:4375	KC:i:421128
+S	67	*	LN:i:5063	KC:i:530425
+S	68	*	LN:i:78	KC:i:10057
+S	69	*	LN:i:10204	KC:i:1039066
+S	71	*	LN:i:789	KC:i:65350
+S	72	*	LN:i:95	KC:i:6170
+S	73	*	LN:i:48	KC:i:14
+S	76	*	LN:i:54	KC:i:1373
+S	77	*	LN:i:4167	KC:i:460259
+S	78	*	LN:i:49	KC:i:925
+S	79	*	LN:i:95	KC:i:5402
+S	83	*	LN:i:15015	KC:i:1487985
+S	84	*	LN:i:9811	KC:i:1021233
+S	85	*	LN:i:3483	KC:i:365113
+S	86	*	LN:i:7953	KC:i:722908
+L	3	+	65	-	47M
+L	3	-	76	-	47M
+L	5	+	47	-	47M
+L	5	-	22	-	47M
+L	5	-	32	+	47M
+L	7	+	49	-	47M
+L	8	+	33	-	47M
+L	8	+	55	-	36M
+L	8	-	78	+	47M
+L	8	-	79	+	47M
+L	9	+	37	-	47M
+L	9	+	47	+	46M
+L	9	-	67	-	47M
+L	9	-	69	-	47M
+L	10	+	47	+	47M
+L	11	-	43	-	47M
+L	14	+	30	+	47M
+L	14	+	31	+	47M
+L	14	+	73	-	47M
+L	17	+	21	-	47M
+L	18	+	78	-	47M
+L	19	+	76	+	47M
+L	19	-	76	-	47M
+L	20	-	76	+	47M
+L	21	+	51	-	47M
+L	21	-	32	-	47M
+L	21	-	66	+	47M
+L	22	+	63	+	47M
+L	23	+	68	-	47M
+L	27	+	30	+	47M
+L	27	+	31	+	47M
+L	27	+	73	-	47M
+L	27	-	31	-	47M
+L	27	-	83	+	47M
+L	28	+	43	+	47M
+L	30	+	30	+	47M
+L	30	+	31	+	47M
+L	30	+	73	-	47M
+L	30	-	34	-	47M
+L	31	-	34	-	47M
+L	32	-	63	+	47M
+L	33	+	72	-	47M
+L	33	-	44	-	47M
+L	33	-	55	-	16M
+L	34	+	73	-	47M
+L	36	-	63	-	47M
+L	36	-	85	+	47M
+L	37	-	49	+	47M
+L	39	+	56	+	47M
+L	39	+	67	+	47M
+L	39	-	71	-	47M
+L	39	-	65	+	14M
+L	41	+	43	+	47M
+L	42	+	65	-	47M
+L	43	+	60	+	47M
+L	47	+	59	+	47M
+L	49	+	71	+	47M
+L	49	-	84	+	47M
+L	52	-	65	+	47M
+L	54	+	77	-	47M
+L	54	+	54	+	46M
+L	54	-	58	-	47M
+L	55	+	72	-	36M
+L	55	-	79	-	47M
+L	55	-	78	-	44M
+L	57	+	63	-	47M
+L	57	+	85	+	47M
+L	61	+	68	+	47M
+L	68	+	68	+	26M
+L	72	-	78	+	47M
+L	72	-	79	+	47M