Mercurial > repos > iuc > scanpy_filter
comparison filter.xml @ 8:f87ed6503715 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 7b8af82cb8a3438d2a6535986e357527e5c6efec"
| author | iuc |
|---|---|
| date | Tue, 16 Mar 2021 13:00:13 +0000 |
| parents | 3c86f71498bc |
| children | b409c2486353 |
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| 7:3c86f71498bc | 8:f87ed6503715 |
|---|---|
| 348 <has_text_matching expression="min_disp=0.5"/> | 348 <has_text_matching expression="min_disp=0.5"/> |
| 349 <has_text_matching expression="n_bins=20"/> | 349 <has_text_matching expression="n_bins=20"/> |
| 350 <has_text_matching expression="subset=False"/> | 350 <has_text_matching expression="subset=False"/> |
| 351 </assert_contents> | 351 </assert_contents> |
| 352 </output> | 352 </output> |
| 353 <output name="anndata_out" file="pp.highly_variable_genes.seurat.blobs.h5ad" ftype="h5ad" compare="sim_size"/> | 353 <output name="anndata_out" file="pp.highly_variable_genes.seurat.blobs.h5ad" ftype="h5ad" compare="sim_size" delta="100000" delta_frac="0.2"/> |
| 354 </test> | 354 </test> |
| 355 <test> | 355 <test> |
| 356 <!-- test 5 --> | 356 <!-- test 5 --> |
| 357 <param name="adata" value="krumsiek11.h5ad" /> | 357 <param name="adata" value="krumsiek11.h5ad" /> |
| 358 <conditional name="method"> | 358 <conditional name="method"> |
| 374 <has_text_matching expression="n_top_genes=2"/> | 374 <has_text_matching expression="n_top_genes=2"/> |
| 375 <has_text_matching expression="n_bins=20"/> | 375 <has_text_matching expression="n_bins=20"/> |
| 376 <has_text_matching expression="subset=True"/> | 376 <has_text_matching expression="subset=True"/> |
| 377 </assert_contents> | 377 </assert_contents> |
| 378 </output> | 378 </output> |
| 379 <output name="anndata_out" file="pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad" ftype="h5ad" compare="sim_size"/> | 379 <output name="anndata_out" file="pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad" ftype="h5ad" compare="sim_size" delta="100000" delta_frac="0.9"/> |
| 380 </test> | 380 </test> |
| 381 <test> | 381 <test> |
| 382 <!-- test 6 --> | 382 <!-- test 6 --> |
| 383 <param name="adata" value="krumsiek11.h5ad" /> | 383 <param name="adata" value="krumsiek11.h5ad" /> |
| 384 <conditional name="method"> | 384 <conditional name="method"> |
| 442 <has_text_matching expression="total_counts=20000"/> | 442 <has_text_matching expression="total_counts=20000"/> |
| 443 <has_text_matching expression="random_state=0"/> | 443 <has_text_matching expression="random_state=0"/> |
| 444 <has_text_matching expression="replace=False"/> | 444 <has_text_matching expression="replace=False"/> |
| 445 </assert_contents> | 445 </assert_contents> |
| 446 </output> | 446 </output> |
| 447 <output name="anndata_out" file="pp.downsample_counts.random-randint.h5ad" ftype="h5ad" compare="sim_size"/> | 447 <output name="anndata_out" file="pp.downsample_counts.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="10000000" delta_frac="0.5"/> |
| 448 </test> | 448 </test> |
| 449 </tests> | 449 </tests> |
| 450 <help><![CDATA[ | 450 <help><![CDATA[ |
| 451 | 451 |
| 452 Filter cells outliers based on counts and numbers of genes expressed (`pp.filter_cells`) | 452 Filter cells outliers based on counts and numbers of genes expressed (`pp.filter_cells`) |