Mercurial > repos > iuc > scanpy_filter

diff filter.xml @ 8:f87ed6503715 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 7b8af82cb8a3438d2a6535986e357527e5c6efec"
author iuc
date Tue, 16 Mar 2021 13:00:13 +0000
parents 3c86f71498bc
children b409c2486353
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line diff
--- a/filter.xml	Wed May 20 16:12:00 2020 -0400
+++ b/filter.xml	Tue Mar 16 13:00:13 2021 +0000
@@ -350,7 +350,7 @@
                     <has_text_matching expression="subset=False"/>
                 </assert_contents>
             </output>
-            <output name="anndata_out" file="pp.highly_variable_genes.seurat.blobs.h5ad" ftype="h5ad" compare="sim_size"/>
+            <output name="anndata_out" file="pp.highly_variable_genes.seurat.blobs.h5ad" ftype="h5ad" compare="sim_size" delta="100000" delta_frac="0.2"/>
         </test>
         <test>
             <!-- test 5 -->
@@ -376,7 +376,7 @@
                     <has_text_matching expression="subset=True"/>
                 </assert_contents>
             </output>
-            <output name="anndata_out" file="pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad" ftype="h5ad" compare="sim_size"/>
+            <output name="anndata_out" file="pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad" ftype="h5ad" compare="sim_size" delta="100000" delta_frac="0.9"/>
         </test>
         <test>
             <!-- test 6 -->
@@ -444,7 +444,7 @@
                     <has_text_matching expression="replace=False"/>
                 </assert_contents>
             </output>
-            <output name="anndata_out" file="pp.downsample_counts.random-randint.h5ad" ftype="h5ad" compare="sim_size"/>
+            <output name="anndata_out" file="pp.downsample_counts.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="10000000" delta_frac="0.5"/>
         </test>
     </tests>
     <help><![CDATA[