Mercurial > repos > iuc > scanpy_filter
changeset 5:8b9610ab366a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85"
| author | iuc |
|---|---|
| date | Mon, 10 Feb 2020 05:29:59 -0500 |
| parents | a72e9faea895 |
| children | a97abb8cd15b |
| files | filter.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/filter.xml Wed Dec 18 16:05:45 2019 -0500 +++ b/filter.xml Mon Feb 10 05:29:59 2020 -0500 @@ -407,7 +407,7 @@ `max_counts`, `max_genes` per call. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.filter_cells.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.filter_cells.html>`__ Filter genes based on number of cells or counts (`pp.filter_genes`) @@ -421,14 +421,14 @@ `max_counts`, `max_cells` per call. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.filter_genes.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.filter_genes.html>`__ Filters out genes based on fold change and fraction of genes expressing the gene within and outside the groupby categories (`tl.filter_rank_genes_groups`) ========================================================================================================================================================== More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.filter_rank_genes_groups.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.filter_rank_genes_groups.html>`__ Annotate highly variable genes (`pp.highly_variable_genes`) @@ -443,7 +443,7 @@ ====================================================================== More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.subsample.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.subsample.html>`__ Downsample counts (`pp.downsample_counts`) ========================================== @@ -452,7 +452,7 @@ has been implemented by M. D. Luecken. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.downsample_counts.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.downsample_counts.html>`__ ]]></help>