Mercurial > repos > iuc > scanpy_filter
changeset 14:d636ce5cde16 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de
| author | iuc |
|---|---|
| date | Sat, 18 May 2024 18:29:27 +0000 |
| parents | 277313130da5 |
| children | aa0059118fb9 |
| files | filter.xml macros.xml |
| diffstat | 2 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/filter.xml Thu Mar 14 15:36:41 2024 +0000 +++ b/filter.xml Sat May 18 18:29:27 2024 +0000 @@ -458,7 +458,7 @@ `max_counts`, `max_genes` per call. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.filter_cells.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.filter_cells.html>`__ Filter genes based on number of cells or counts (`pp.filter_genes`) @@ -472,14 +472,14 @@ `max_counts`, `max_cells` per call. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.filter_genes.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.filter_genes.html>`__ Filters out genes based on fold change and fraction of genes expressing the gene within and outside the groupby categories (`tl.filter_rank_genes_groups`) ========================================================================================================================================================== More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.filter_rank_genes_groups.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.tl.filter_rank_genes_groups.html>`__ Annotate highly variable genes (`pp.highly_variable_genes`) @@ -494,7 +494,7 @@ ====================================================================== More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.subsample.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.subsample.html>`__ Downsample counts (`pp.downsample_counts`) ========================================== @@ -503,7 +503,7 @@ has been implemented by M. D. Luecken. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.downsample_counts.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.downsample_counts.html>`__ ]]></help>
--- a/macros.xml Thu Mar 14 15:36:41 2024 +0000 +++ b/macros.xml Sat May 18 18:29:27 2024 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@TOOL_VERSION@">1.9.6</token> - <token name="@VERSION_SUFFIX@">2</token> - <token name="@profile@">22.05</token> + <token name="@VERSION_SUFFIX@">3</token> + <token name="@profile@">21.09</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">scanpy</requirement>