Mercurial > repos > iuc > scanpy_inspect
changeset 5:08192eebb47d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85"
author | iuc |
---|---|
date | Mon, 10 Feb 2020 05:29:16 -0500 |
parents | 9d1997b08ed6 |
children | 5e9171dc8244 |
files | inspect.xml |
diffstat | 1 files changed, 7 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/inspect.xml Wed Dec 18 16:04:45 2019 -0500 +++ b/inspect.xml Mon Feb 10 05:29:16 2020 -0500 @@ -804,7 +804,7 @@ - pct_dropout_by_{expr_type} (e.g. "pct_dropout_by_counts", percentage of cells this feature does not appear in) More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.calculate_qc_metrics.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.calculate_qc_metrics.html>`__ Compute a neighborhood graph of observations, using `pp.neighbors` ================================================================== @@ -823,7 +823,7 @@ This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.neighbors.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.neighbors.html>`__ Score a set of genes, using `tl.score_genes` ============================================ @@ -836,7 +836,7 @@ for Scanpy by Davide Cittaro. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.score_genes.html>`__ Score cell cycle genes, using `tl.score_genes_cell_cycle` ========================================================= @@ -846,7 +846,7 @@ `score_genes` for more explanation. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes_cell_cycle.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.score_genes_cell_cycle.html>`__ Rank genes for characterizing groups, using `tl.rank_genes_groups` ================================================================== @@ -862,7 +862,7 @@ This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.rank_genes_groups.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.rank_genes_groups.html>`__ Calculate an overlap score between data-deriven marker genes and provided markers (`tl.marker_gene_overlap`) @@ -875,13 +875,13 @@ ========================================= More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.log1p.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.log1p.html>`__ Scale data to unit variance and zero mean (`pp.scale`) ====================================================== More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.scale.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.scale.html>`__ Computes the square root the data matrix (`pp.sqrt`) ====================================================