Mercurial > repos > iuc > scanpy_remove_confounders
changeset 5:524aa62a6066 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85"
| author | iuc |
|---|---|
| date | Mon, 10 Feb 2020 05:27:49 -0500 |
| parents | 7a6701edcc92 |
| children | f2f6c703da06 |
| files | remove_confounders.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/remove_confounders.xml Wed Dec 18 16:01:11 2019 -0500 +++ b/remove_confounders.xml Mon Feb 10 05:27:49 2020 -0500 @@ -156,7 +156,7 @@ inspired by Seurat's `regressOut` function in R. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.regress_out.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.regress_out.html>`__ Correct batch effects by matching mutual nearest neighbors, using `pp.mnn_correct` ================================================================================== @@ -167,7 +167,7 @@ Be reminded that it is not advised to use the corrected data matrices for differential expression testing. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.api.pp.mnn_correct.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.api.pp.mnn_correct.html>`__ Correct batch effects with ComBat function (`pp.combat`) @@ -176,7 +176,7 @@ Corrects for batch effects by fitting linear models, gains statistical power via an EB framework where information is borrowed across genes. This uses the implementation of ComBat More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.combat.html>`__ +<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.combat.html>`__ ]]></help>