Mercurial > repos > iuc > seqkit_grep

changeset 4:02c253504d9b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqkit commit 3f642e2789c23709a041d4165285bcdce9a5c135
author iuc
date Thu, 05 Mar 2026 14:04:06 +0000
parents 8bb1d9180ce7
children
files macros.xml seqkit_grep.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Dec 04 12:51:35 2025 +0000
+++ b/macros.xml	Thu Mar 05 14:04:06 2026 +0000
@@ -1,7 +1,7 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.12.0</token>
+    <token name="@TOOL_VERSION@">2.13.0</token>
     <token name="@VERSION_SUFFIX@">0</token>
-    <token name="@PROFILE@">24.0</token>
+    <token name="@PROFILE@">25.0</token>
     <token name="@FASTQ_TYPES@">fasta,fasta.gz,fastqsanger,fastqsanger.gz</token>
     <xml name="bio_tools">
         <xrefs>
--- a/seqkit_grep.xml	Thu Dec 04 12:51:35 2025 +0000
+++ b/seqkit_grep.xml	Thu Mar 05 14:04:06 2026 +0000
@@ -70,7 +70,7 @@
                 <param argument="--use-regexp" type="boolean" truevalue="--use-regexp" falsevalue="" checked="false" label="Interpret pattern as regular expression" help="Enable regular expression matching"/>
             </when>
             <when value="file">
-                <param argument="--pattern-file" type="data" format="fasta" label="Pattern/motif file"/>
+                <param argument="--pattern-file" type="data" format="txt" label="Pattern/motif file" help="One pattern per line"/>
             </when>
         </conditional>
         <section name="search_options" title="Search options">