Mercurial > repos > iuc > seqtk
comparison seqtk_mergefa.xml @ 7:58c8ece95b53 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 35c8480f525d211d5e9996086c60b2c6d4f89146"
author | iuc |
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date | Tue, 10 Sep 2019 13:58:48 -0400 |
parents | a09586d5149a |
children | 3da72230c066 |
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6:288f7f69fe25 | 7:58c8ece95b53 |
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13 $m | 13 $m |
14 $r | 14 $r |
15 $h | 15 $h |
16 '$in_fa1' | 16 '$in_fa1' |
17 '$in_fa2' | 17 '$in_fa2' |
18 #echo "| pigz --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' | 18 #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' |
19 ]]></command> | 19 ]]></command> |
20 <inputs> | 20 <inputs> |
21 <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> | 21 <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> |
22 <param name="in_fa2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> | 22 <param name="in_fa2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> |
23 <param argument="-q" type="integer" value="0" label="Quality threshold"/> | 23 <param argument="-q" type="integer" value="0" label="Quality threshold"/> |