Mercurial > repos > iuc > seqtk
changeset 7:58c8ece95b53 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 35c8480f525d211d5e9996086c60b2c6d4f89146"
| author | iuc |
|---|---|
| date | Tue, 10 Sep 2019 13:58:48 -0400 |
| parents | 288f7f69fe25 |
| children | 3da72230c066 |
| files | macros.xml seqtk_mergefa.xml seqtk_mergepe.xml |
| diffstat | 3 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/macros.xml Fri Sep 06 09:10:07 2019 -0400 +++ b/macros.xml Tue Sep 10 13:58:48 2019 -0400 @@ -26,7 +26,7 @@ <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/> </xml> <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[ - #echo "| pigz --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' + #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution**
--- a/seqtk_mergefa.xml Fri Sep 06 09:10:07 2019 -0400 +++ b/seqtk_mergefa.xml Tue Sep 10 13:58:48 2019 -0400 @@ -15,7 +15,7 @@ $h '$in_fa1' '$in_fa2' -#echo "| pigz --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' +#echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></command> <inputs> <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/>
--- a/seqtk_mergepe.xml Fri Sep 06 09:10:07 2019 -0400 +++ b/seqtk_mergepe.xml Tue Sep 10 13:58:48 2019 -0400 @@ -10,7 +10,7 @@ seqtk mergepe '$in_fq1' '$in_fq2' - #echo "| pigz --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' + #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></command> <inputs> <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/>