Mercurial > repos > iuc > seqtk
comparison seqtk_mergepe.xml @ 7:58c8ece95b53 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 35c8480f525d211d5e9996086c60b2c6d4f89146"
author | iuc |
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date | Tue, 10 Sep 2019 13:58:48 -0400 |
parents | a09586d5149a |
children | 3da72230c066 |
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6:288f7f69fe25 | 7:58c8ece95b53 |
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8 <expand macro="stdio"/> | 8 <expand macro="stdio"/> |
9 <command><![CDATA[ | 9 <command><![CDATA[ |
10 seqtk mergepe | 10 seqtk mergepe |
11 '$in_fq1' | 11 '$in_fq1' |
12 '$in_fq2' | 12 '$in_fq2' |
13 #echo "| pigz --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' | 13 #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' |
14 ]]></command> | 14 ]]></command> |
15 <inputs> | 15 <inputs> |
16 <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> | 16 <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> |
17 <param name="in_fq2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> | 17 <param name="in_fq2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> |
18 </inputs> | 18 </inputs> |