Mercurial > repos > iuc > shovill

changeset 2:f698c7604b3b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/shovill commit 686710a7d313b828f1daed20c4055479727f2d91
author iuc
date Wed, 17 Oct 2018 11:43:35 -0400
parents 57d5928f456e
children 865119fcb694
files shovill.xml
diffstat 1 files changed, 7 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/shovill.xml	Wed Mar 07 02:10:01 2018 -0500
+++ b/shovill.xml	Wed Oct 17 11:43:35 2018 -0400
@@ -17,7 +17,7 @@
                 --R2 '$library.input1.reverse'
             #end if
             $trim
-            --namefmt "$adv.namefmt"
+            --namefmt '$adv.namefmt'
             --depth '$adv.depth'
             #if $adv.gsize
                 --gsize '$adv.gsize'
@@ -53,7 +53,12 @@
         <section name="adv" title="Advanced options" expanded="False">
             <param name="namefmt" argument="--namefmt" type="text" value="contig%05d" label="Contig name format" help="Format of contig FASTA IDs in 'printf' style (default: 'contig%05d')" >
                 <sanitizer>
-                    <valid initial="string.printable" />
+                    <valid initial="string.printable">
+                        <remove value="&apos;" />
+                    </valid>
+                    <mapping initial="none">
+                        <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;" />
+                    </mapping>
                 </sanitizer>
             </param>
             <param name="depth" argument="--depth" type="integer" value="100" label="Depth" help="Sub-sample --R1/--R2 to this depth. Disable with --depth 0 (default: 100)" />