Mercurial > repos > iuc > slamdunk
changeset 6:141f65f7c7c8 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit 0502309b17c070efd9c8ab28e538279055835a45"
| author | iuc |
|---|---|
| date | Tue, 13 Jul 2021 14:01:12 +0000 |
| parents | 8b62f89924a7 |
| children | 5a26589d95ad |
| files | alleyoop.xml macros.xml slamdunk.xml |
| diffstat | 3 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/alleyoop.xml Sat Jan 18 12:59:37 2020 -0500 +++ b/alleyoop.xml Tue Jul 13 14:01:12 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="alleyoop" name="Alleyoop" version="@TOOL_VERSION@"> +<tool id="alleyoop" name="Alleyoop" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>- post-processing and QC of Slamdunk analyses</description> <macros> <import>macros.xml</import> @@ -118,10 +118,10 @@ <param name="mq" value="27" /> <param name="bams" value="True" /> <output_collection name="outputTCReads" count="2"> - <element name="reads1" ftype="bam" file="reads1_TCReads.bam" /> + <element name="reads1" ftype="bam" file="reads1_TCReads.bam" lines_diff="8"/> </output_collection> <output_collection name="outputbkgdReads" count="2"> - <element name="reads1" ftype="bam" file="reads1_backgroundReads.bam" /> + <element name="reads1" ftype="bam" file="reads1_backgroundReads.bam" lines_diff="8"/><!-- allow for diff in RG and PG lines --> </output_collection> </test> </tests>
--- a/macros.xml Sat Jan 18 12:59:37 2020 -0500 +++ b/macros.xml Tue Jul 13 14:01:12 2021 +0000 @@ -1,6 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">0.4.1</token> + <token name="@PROFILE@">20.05</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">slamdunk</requirement>
--- a/slamdunk.xml Sat Jan 18 12:59:37 2020 -0500 +++ b/slamdunk.xml Tue Jul 13 14:01:12 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="slamdunk" name="Slamdunk" version="@TOOL_VERSION@+galaxy2"> +<tool id="slamdunk" name="Slamdunk" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@"> <description>- streamlining SLAM-seq analysis with ultra-high sensitivity</description> <macros> <import>macros.xml</import>