annotate test-data/pBR322.gbk @ 10:5b4ac70948d2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
author iuc
date Tue, 27 Mar 2018 09:44:18 -0400
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1 LOCUS SYNPBR322 4361 bp DNA circular SYN 30-SEP-2008
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2 DEFINITION Cloning vector pBR322, complete sequence.
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3 ACCESSION J01749 K00005 L08654 M10282 M10283 M10286 M10356 M10784 M10785
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4 M10786 M33694 V01119
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5 VERSION J01749.1
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6 KEYWORDS ampicillin resistance; beta-lactamase; cloning vector; drug
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7 resistance protein; origin of replication; plasmid; tetracycline
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8 resistance.
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9 SOURCE Cloning vector pBR322
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10 ORGANISM Cloning vector pBR322
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11 other sequences; artificial sequences; vectors.
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12 REFERENCE 1 (bases 1 to 3; 3259 to 4361)
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13 AUTHORS Sutcliffe,J.G.
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14 TITLE Nucleotide sequence of the ampicillin resistance gene of
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15 Escherichia coli plasmid pBR322
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16 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 75 (8), 3737-3741 (1978)
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17 PUBMED 358200
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18 REFERENCE 2 (bases 1 to 4361)
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19 AUTHORS Sutcliffe,J.G.
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20 TITLE Complete nucleotide sequence of the Escherichia coli plasmid pBR322
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21 JOURNAL Cold Spring Harb. Symp. Quant. Biol. 43 (Pt 1), 77-90 (1979)
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22 PUBMED 383387
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23 REFERENCE 3 (bases 1500 to 2300)
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24 AUTHORS Reed,R.R., Young,R.A., Steitz,J.A., Grindley,N.D. and Guyer,M.S.
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25 TITLE Transposition of the Escherichia coli insertion element gamma
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26 generates a five-base-pair repeat
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27 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 76 (10), 4882-4886 (1979)
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28 PUBMED 388421
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29 REFERENCE 4 (bases 2207 to 2265)
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30 AUTHORS Covarrubias,L., Cervantes,L., Covarrubias,A., Soberon,X.,
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31 Vichido,I., Blanco,A., Kupersztoch-Portnoy,Y.M. and Bolivar,F.
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32 TITLE Construction and characterization of new cloning vehicles. V.
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33 Mobilization and coding properties of pBR322 and several deletion
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34 derivatives including pBR327 and pBR328
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35 JOURNAL Gene 13 (1), 25-35 (1981)
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36 PUBMED 6263753
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37 REFERENCE 5 (bases 2000 to 2500)
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38 AUTHORS Marians,K.J., Soeller,W. and Zipursky,S.L.
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39 TITLE Maximal limits of the Escherichia coli replication factor Y
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40 effector site sequences in pBR322 DNA
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41 JOURNAL J. Biol. Chem. 257 (10), 5656-5662 (1982)
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42 PUBMED 6279609
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43 REFERENCE 6 (bases 1 to 80; 4151 to 4229; 4349 to 4361)
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44 AUTHORS Brosius,J., Cate,R.L. and Perlmutter,A.P.
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45 TITLE Precise location of two promoters for the beta-lactamase gene of
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46 pBR322. S1 mapping of ribonucleic acid isolated from Escherichia
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47 coli or synthesized in vitro
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48 JOURNAL J. Biol. Chem. 257 (15), 9205-9210 (1982)
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49 PUBMED 6178738
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50 REFERENCE 7 (bases 4241 to 4343)
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51 AUTHORS Van Dyke,M.W., Hertzberg,R.P. and Dervan,P.B.
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52 TITLE Map of distamycin, netropsin, and actinomycin binding sites on
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53 heterogeneous DNA: DNA cleavage-inhibition patterns with
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54 methidiumpropyl-EDTA.Fe(II)
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55 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79 (18), 5470-5474 (1982)
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56 PUBMED 6291045
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57 REFERENCE 8 (bases 584 to 709)
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58 AUTHORS Peden,K.W. and Nathans,D.
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59 TITLE Local mutagenesis within deletion loops of DNA heteroduplexes
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60 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79 (23), 7214-7217 (1982)
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61 PUBMED 6760191
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62 REFERENCE 9 (bases 373 to 649)
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63 AUTHORS Peden,K.W.
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64 TITLE Revised sequence of the tetracycline-resistance gene of pBR322
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65 JOURNAL Gene 22 (2-3), 277-280 (1983)
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66 PUBMED 6307828
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67 REFERENCE 10 (bases 132 to 181)
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68 AUTHORS Watabe,H., Iino,T., Kaneko,T., Shibata,T. and Ando,T.
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69 TITLE A new class of site-specific endodeoxyribonucleases. Endo.Sce I
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70 isolated from a eukaryote, Saccharomyces cerevisiae
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71 JOURNAL J. Biol. Chem. 258 (8), 4663-4665 (1983)
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72 PUBMED 6300094
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73 REFERENCE 11 (bases 368 to 581)
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74 AUTHORS Livneh,Z.
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75 TITLE Directed mutagenesis method for analysis of mutagen specificity:
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76 application to ultraviolet-induced mutagenesis
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77 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (1), 237-241 (1983)
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78 PUBMED 6337373
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79 REFERENCE 12 (bases 2627 to 2682; 2781 to 2828)
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80 AUTHORS Mascharak,P.K., Sugiura,Y., Kuwahara,J., Suzuki,T. and Lippard,S.J.
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81 TITLE Alteration and activation of sequence-specific cleavage of DNA by
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82 bleomycin in the presence of the antitumor drug
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83 cis-diamminedichloroplatinum(II)
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84 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (22), 6795-6798 (1983)
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85 PUBMED 6196777
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86 REFERENCE 13 (bases 4276 to 4336)
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87 AUTHORS Schultz,P.G. and Dervan,P.B.
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88 TITLE Sequence-specific double-strand cleavage of DNA by
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89 penta-N-methylpyrrolecarboxamide-EDTA X Fe(II)
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90 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (22), 6834-6837 (1983)
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91 PUBMED 6417654
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92 REFERENCE 14 (bases 518 to 528)
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93 AUTHORS Sutcliffe,J.G.
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94 JOURNAL Unpublished
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95 REFERENCE 15 (bases 2395 to 2495)
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96 AUTHORS Fuller,R.S., Funnell,B.E. and Kornberg,A.
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97 TITLE The dnaA protein complex with the E. coli chromosomal replication
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98 origin (oriC) and other DNA sites
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99 JOURNAL Cell 38 (3), 889-900 (1984)
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100 PUBMED 6091903
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101 REFERENCE 16 (bases 2729 to 2731)
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102 AUTHORS Lathe,R., Kieny,M.P., Skory,S. and Lecocq,J.P.
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103 TITLE Linker tailing: unphosphorylated linker oligonucleotides for
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104 joining DNA termini
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105 JOURNAL DNA 3 (2), 173-182 (1984)
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106 PUBMED 6327214
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107 REFERENCE 17 (bases 2729 to 2730)
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108 AUTHORS Heusterspreute,M. and Davison,J.
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109 TITLE Restriction site bank vectors. II. DNA sequence analysis of plasmid
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110 pJRD158
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111 JOURNAL DNA 3 (3), 259-268 (1984)
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112 PUBMED 6086259
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113 REFERENCE 18 (bases 2113 to 2186; 2348 to 2415)
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114 AUTHORS Abarzua,P., Soeller,W. and Marians,K.J.
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115 TITLE Mutational analysis of primosome assembly sites. I. Distinct
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116 classes of mutants in the pBR322 Escherichia coli factor Y DNA
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117 effector sequences
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118 JOURNAL J. Biol. Chem. 259 (22), 14286-14292 (1984)
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119 PUBMED 6209275
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120 REFERENCE 19 (bases 2348 to 2415)
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121 AUTHORS Soeller,W., Abarzua,P. and Marians,K.J.
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122 TITLE Mutational analysis of primosome assembly sites. II. Role of
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123 secondary structure in the formation of active sites
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124 JOURNAL J. Biol. Chem. 259 (22), 14293-14300 (1984)
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125 PUBMED 6150042
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126 REFERENCE 20 (bases 1 to 4361)
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127 AUTHORS Van Dyke,M.M. and Dervan,P.B.
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128 TITLE Echinomycin binding sites on DNA
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129 JOURNAL Science 225 (4667), 1122-1127 (1984)
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130 PUBMED 6089341
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131 REFERENCE 21 (sites)
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132 AUTHORS Pouwels,P.H., Enger-Valk,B.E. and Brammar,W.J.
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133 JOURNAL (in) CLONING VECTORS. Elsevier Scientific Publishing, Amsterdam
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134 (1985)
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135 REMARK Vector I-A-iv-1
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136 REFERENCE 22 (bases 1 to 4361)
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137 AUTHORS Watson,N.
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138 TITLE A new revision of the sequence of plasmid pBR322
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139 JOURNAL Gene 70 (2), 399-403 (1988)
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140 PUBMED 3063608
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141 REFERENCE 23 (sites)
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142 AUTHORS Gilbert,W.
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143 TITLE Obtained from VecBase 3.0
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144 JOURNAL Unpublished
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145 COMMENT On or before Apr 4, 2002 this sequence version replaced L08654.1,
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146 gi:58257.
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147 The circular sequence is numbered such that 0 is the middle of the
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148 unique EcoRI site and the count increases first through the tet
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149 genes, the pMB1 material, and finally through the Tn3 region.
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150 Plasmid pBR322 contains ampicillin and tetracycline resistance
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151 genes. The ampicillin resistance gene (amp-r) is a penicillin
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152 beta-lactamase. Promoters P1 and P3 are for the beta-lactamase
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153 gene. P3 is the natural promoter, and P1 is artificially created by
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154 the ligation of two different DNA fragments to create pBR322. P2 is
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155 in the same region as P1, but it is on the opposite strand and
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156 initiates transcription in the direction of the tetracycline
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157 resistance gene.
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158 Mutational studies in the primosome assembly sites indicate four
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159 types of mutations: Class I having no effect on the activities
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160 elicited by the DNA site and the bases involved are probably
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161 spacers; Class II requiring higher Mg-2+ concentrations than the
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162 wild-type to be fully activated as factor Y ATPase effectors; Class
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163 III co-inactivating both the ATPase effector and DNA replication
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164 template activity of the site, indicating that they probably
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165 represent essential contact points between factor Y and the DNA;
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166 Class IV having a replication template activity intermediate that
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167 of class III and class II mutant DNAs.
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168 Specific sites within or near the origins of replication are
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169 recognized by dnaA protein. Without dnaA binding to the origin of
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170 replication chromosomal replication is not possible (15). pBR322
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171 DNA contains two separate regions on opposite strands and close to
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172 the origin of replication which, when in single-stranded form, can
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173 act as effectors for the ATPase activity of E.coli replication
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174 factor Y (5). Small fragments of DNA containing these sites when
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175 cloned in an f1 phage vector act as origins of DNA replication
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176 allowing the formation of complementary double-stranded DNA in
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177 rifampicin-resistant, dna(B,G,C)-dependent fashion in vitro (5).
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178 The biological activity of echinomycin is thought to be related to
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179 the formation of complexes by intercalating with cellular DNA (20).
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180 Complete source information:
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181 Plasmid pBR322 from E.coli (2),(1),(3),(6),(11),(8),(5),(7),(12),
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182 (13),(10),(9),(14),(18),(19),(15),(20),(16); pBR322 DNA in pXf3
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183 (4).
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184 The following data and their annotation were supplied by Will
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185 Gilbert under the auspices of the Curator Program.
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186 CROSSREFERENCE
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187 #parent
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188 GenBank(50):pSC101C, GenBank(50):Trn3
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iuc
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189 #offspring
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iuc
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190 VecBase(3):pBR325, VecBase(3):pBR327,
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191 VecBase(3):pBR328,
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192 VecBase(3):pAT153, VecBase(3):pUC7,
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iuc
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193 VecBase(3):pJRD158,
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194 VecBase(3):PiVX, VecBase(3):PiAN7,
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195 VecBase(3):pSP64,
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196 VecBase(3):pSP65, VecBase(3):pGEM1,
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197 VecBase(3):pGEM2,
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iuc
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198 VecBase(3):pGEM3, VecBase(3):pGEM4,
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199 VecBase(3):pKK223,
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iuc
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200 VecBase(3):pLBU3, VecBase(3):pTrS3,
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iuc
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201 VecBase(3):pRSVNeo,
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iuc
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202 VecBase(3):pSV2Cat, VecBase(3):M13mp9,
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iuc
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203 VecBase(3):pHC79,
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iuc
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204 VecBase(3):pV34, VecBase(3):pKTH601,
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iuc
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205 VecBase(3):pKTH604,
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iuc
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206 VecBase(3):pKTH605, VecBase(3):pKTH606,
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iuc
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207 VecBase(3):YEp24,
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iuc
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208 VecBase(3):YIp5, VecBase(3):YRp17,
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iuc
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209 VecBase(3):pSP18,
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iuc
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210 VecBase(3):pSP19,
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iuc
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211 VecBase(3):pSP6T3, VecBase(3):pSP6T719,
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iuc
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212 VecBase(3):pT712,
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iuc
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213 VecBase(3):pT713, VecBase(3):pT7T318,
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iuc
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214 VecBase(3):pT7T319,
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iuc
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215 VecBase(3):pT7T3A18, VecBase(3):pT7T3A19,
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iuc
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216 VecBase(3):pEX1,
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iuc
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217 VecBase(3):pEX2, VecBase(3):pEX3,
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218 VecBase(3):pCKSP6,
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iuc
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219 VecBase(3):pACYC177, VecBase(3):pKO1,
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220 VecBase(3):pKO2,
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221 VecBase(3):pKM1,
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iuc
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222 VecBase(3):pKM2, VecBase(3):pMBL1,
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223 VecBase(3):pMBL604,
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iuc
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diff changeset
224 VecBase(3):pMC1511, VecBase(3):pMC1871,
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iuc
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diff changeset
225 VecBase(3):pAA37X,
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226 VecBase(3):pUR278, VecBase(3):pUR288,
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iuc
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diff changeset
227 VecBase(3):pUR289,
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iuc
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228 VecBase(3):pUR290, VecBase(3):pUR291,
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iuc
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229 VecBase(3):pUR292,
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iuc
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230 VecBase(3):pUR222.
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231 FEATURES Location/Qualifiers
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232 source 1..4361
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233 /organism="Cloning vector pBR322"
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234 /mol_type="other DNA"
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235 /db_xref="taxon:47470"
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236 /tissue_lib="ATCC 31344, ATCC 37017"
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237 /focus
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iuc
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diff changeset
238 source 1..1762
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239 /organism="Plasmid pSC101"
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240 /mol_type="other DNA"
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iuc
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241 /db_xref="taxon:2625"
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iuc
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242 misc_binding 24..27
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243 /bound_moiety="echinomycin"
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244 regulatory complement(27..33)
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245 /regulatory_class="promoter"
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246 /note="promoter P1 (6)"
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iuc
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247 misc_binding 39..42
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248 /bound_moiety="echinomycin"
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iuc
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249 regulatory 43..49
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250 /regulatory_class="promoter"
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iuc
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251 /note="promoter P2 (6)"
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iuc
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252 misc_binding 53..56
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iuc
parents:
diff changeset
253 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
254 misc_binding 67..70
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
255 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
256 misc_binding 80..83
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
257 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
258 gene 86..1276
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
259 /gene="tet"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
260 CDS 86..1276
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
261 /gene="tet"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
262 /codon_start=1
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
263 /transl_table=11
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
264 /product="tetracycline resistance protein"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
265 /protein_id="AAB59735.1"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
266 /translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASH
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
267 YGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAG
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
268 RIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLH
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
269 APFLAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTV
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
270 FFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGE
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
271 KQAIIAGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQG
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
272 QLQGSLAALTSLTSITGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSR
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
273 ATST"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
274 misc_feature complement(141..142)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
275 /note="Endo.Sce I cleavage site coordinated with site at
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
276 base 146 (10)"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
277 misc_feature 146..147
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
278 /gene="tet"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
279 /note="Endo.Sce I cleavage site coordinated with site at
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
280 base 142 (10)"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
281 misc_binding 411..414
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
282 /gene="tet"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
283 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
284 misc_difference 426
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
285 /gene="tet"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
286 /note="conflict"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
287 /citation=[11]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
288 /replace=""
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
289 misc_binding 469..472
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
290 /gene="tet"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
291 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
292 old_sequence 526..528
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
293 /gene="tet"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
294 /citation=[17]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
295 repeat_region complement(1515..1519)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
296 /note="gamma-delta insertion target sequence"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
297 /rpt_type=direct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
298 misc_feature 1636..1762
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
299 /note="from pSC101 (bp 1860-1986)"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
300 repeat_region complement(1788..1792)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
301 /note="gamma-delta insertion target sequence"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
302 /rpt_type=direct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
303 misc_difference 1891..1892
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
304 /note="conflict"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
305 /citation=[23]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
306 /replace="att"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
307 old_sequence 1892..1893
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
308 /citation=[2]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
309 /citation=[22]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
310 regulatory 1905..1910
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
311 /regulatory_class="ribosome_binding_site"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
312 regulatory 1905..1909
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
313 /regulatory_class="ribosome_binding_site"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
314 /note="Shine-Dalgarno sequence"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
315 misc_difference 1913..1914
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
316 /note="conflict"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
317 /citation=[23]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
318 /replace="caa"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
319 old_sequence 1914..1915
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
320 /citation=[17]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
321 CDS 1915..2106
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
322 /codon_start=1
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
323 /transl_table=11
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
324 /product="ROP protein"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
325 /protein_id="AAB59736.1"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
326 /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDH
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
327 ADELYRSCLARFGDDGENL"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
328 misc_feature 2011..2167
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
329 /note="H-strand Y effector site"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
330 /citation=[5]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
331 repeat_region complement(2245..2249)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
332 /note="gamma-delta insertion target sequence"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
333 /rpt_type=direct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
334 misc_feature complement(2351..2414)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
335 /note="L-strand Y effector site"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
336 /citation=[5]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
337 misc_binding 2439..2447
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
338 /bound_moiety="dnaA"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
339 rep_origin 2535
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
340 old_sequence 2729..2730
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
341 /note="revision according to (17)"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
342 /citation=[2]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
343 /citation=[17]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
344 /replace="at"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
345 old_sequence 2729
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
346 /citation=[17]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
347 old_sequence 2730
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
348 /note="revision according to (16)"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
349 /citation=[2]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
350 /citation=[16]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
351 /citation=[17]
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
352 /replace="t"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
353 mobile_element 3148..4361
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
354 /mobile_element_type="transposon:Tn3"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
355 repeat_region 3148..3185
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
356 /note="corresponds to one of the 38bp repeats found in Tn3
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
357 (bp 1-38 and complement (4920-4957))"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
358 /rpt_type=inverted
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
359 gene complement(3293..4153)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
360 /gene="bla"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
361 CDS complement(3293..4153)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
362 /gene="bla"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
363 /note="E-286"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
364 /codon_start=1
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
365 /transl_table=11
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
366 /product="beta-lactamase"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
367 /protein_id="AAB59737.1"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
368 /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
369 IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
370 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
371 DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
372 LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
373 EIGASLIKHW"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
374 sig_peptide complement(4085..4153)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
375 /gene="bla"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
376 mat_peptide complement(3296..4084)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
377 /gene="bla"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
378 /product="beta-lactamase"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
379 regulatory complement(4161..4165)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
380 /regulatory_class="ribosome_binding_site"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
381 /note="Shine-Dalgarno sequence"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
382 regulatory complement(4188..4194)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
383 /regulatory_class="promoter"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
384 /note="promoter P3 (6)"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
385 misc_binding complement(4268..4271)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
386 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
387 misc_binding complement(4280..4283)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
388 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
389 misc_binding complement(4285..4288)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
390 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
391 misc_binding complement(4296..4299)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
392 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
393 misc_binding complement(4311..4314)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
394 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
395 misc_binding complement(4317..4320)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
396 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
397 misc_binding complement(4331..4334)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
398 /bound_moiety="echinomycin"
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
399 ORIGIN
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
400 1 ttctcatgtt tgacagctta tcatcgataa gctttaatgc ggtagtttat cacagttaaa
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
401 61 ttgctaacgc agtcaggcac cgtgtatgaa atctaacaat gcgctcatcg tcatcctcgg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
402 121 caccgtcacc ctggatgctg taggcatagg cttggttatg ccggtactgc cgggcctctt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
403 181 gcgggatatc gtccattccg acagcatcgc cagtcactat ggcgtgctgc tagcgctata
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
404 241 tgcgttgatg caatttctat gcgcacccgt tctcggagca ctgtccgacc gctttggccg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
405 301 ccgcccagtc ctgctcgctt cgctacttgg agccactatc gactacgcga tcatggcgac
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
406 361 cacacccgtc ctgtggatcc tctacgccgg acgcatcgtg gccggcatca ccggcgccac
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
407 421 aggtgcggtt gctggcgcct atatcgccga catcaccgat ggggaagatc gggctcgcca
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
408 481 cttcgggctc atgagcgctt gtttcggcgt gggtatggtg gcaggccccg tggccggggg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
409 541 actgttgggc gccatctcct tgcatgcacc attccttgcg gcggcggtgc tcaacggcct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
410 601 caacctacta ctgggctgct tcctaatgca ggagtcgcat aagggagagc gtcgaccgat
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
411 661 gcccttgaga gccttcaacc cagtcagctc cttccggtgg gcgcggggca tgactatcgt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
412 721 cgccgcactt atgactgtct tctttatcat gcaactcgta ggacaggtgc cggcagcgct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
413 781 ctgggtcatt ttcggcgagg accgctttcg ctggagcgcg acgatgatcg gcctgtcgct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
414 841 tgcggtattc ggaatcttgc acgccctcgc tcaagccttc gtcactggtc ccgccaccaa
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
415 901 acgtttcggc gagaagcagg ccattatcgc cggcatggcg gccgacgcgc tgggctacgt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
416 961 cttgctggcg ttcgcgacgc gaggctggat ggccttcccc attatgattc ttctcgcttc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
417 1021 cggcggcatc gggatgcccg cgttgcaggc catgctgtcc aggcaggtag atgacgacca
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
418 1081 tcagggacag cttcaaggat cgctcgcggc tcttaccagc ctaacttcga tcactggacc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
419 1141 gctgatcgtc acggcgattt atgccgcctc ggcgagcaca tggaacgggt tggcatggat
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
420 1201 tgtaggcgcc gccctatacc ttgtctgcct ccccgcgttg cgtcgcggtg catggagccg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
421 1261 ggccacctcg acctgaatgg aagccggcgg cacctcgcta acggattcac cactccaaga
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
422 1321 attggagcca atcaattctt gcggagaact gtgaatgcgc aaaccaaccc ttggcagaac
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
423 1381 atatccatcg cgtccgccat ctccagcagc cgcacgcggc gcatctcggg cagcgttggg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
424 1441 tcctggccac gggtgcgcat gatcgtgctc ctgtcgttga ggacccggct aggctggcgg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
425 1501 ggttgcctta ctggttagca gaatgaatca ccgatacgcg agcgaacgtg aagcgactgc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
426 1561 tgctgcaaaa cgtctgcgac ctgagcaaca acatgaatgg tcttcggttt ccgtgtttcg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
427 1621 taaagtctgg aaacgcggaa gtcagcgccc tgcaccatta tgttccggat ctgcatcgca
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
428 1681 ggatgctgct ggctaccctg tggaacacct acatctgtat taacgaagcg ctggcattga
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
429 1741 ccctgagtga tttttctctg gtcccgccgc atccataccg ccagttgttt accctcacaa
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
430 1801 cgttccagta accgggcatg ttcatcatca gtaacccgta tcgtgagcat cctctctcgt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
431 1861 ttcatcggta tcattacccc catgaacaga aatccccctt acacggaggc atcagtgacc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
432 1921 aaacaggaaa aaaccgccct taacatggcc cgctttatca gaagccagac attaacgctt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
433 1981 ctggagaaac tcaacgagct ggacgcggat gaacaggcag acatctgtga atcgcttcac
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
434 2041 gaccacgctg atgagcttta ccgcagctgc ctcgcgcgtt tcggtgatga cggtgaaaac
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
435 2101 ctctgacaca tgcagctccc ggagacggtc acagcttgtc tgtaagcgga tgccgggagc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
436 2161 agacaagccc gtcagggcgc gtcagcgggt gttggcgggt gtcggggcgc agccatgacc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
437 2221 cagtcacgta gcgatagcgg agtgtatact ggcttaacta tgcggcatca gagcagattg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
438 2281 tactgagagt gcaccatatg cggtgtgaaa taccgcacag atgcgtaagg agaaaatacc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
439 2341 gcatcaggcg ctcttccgct tcctcgctca ctgactcgct gcgctcggtc gttcggctgc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
440 2401 ggcgagcggt atcagctcac tcaaaggcgg taatacggtt atccacagaa tcaggggata
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
441 2461 acgcaggaaa gaacatgtga gcaaaaggcc agcaaaaggc caggaaccgt aaaaaggccg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
442 2521 cgttgctggc gtttttccat aggctccgcc cccctgacga gcatcacaaa aatcgacgct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
443 2581 caagtcagag gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggaa
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
444 2641 gctccctcgt gcgctctcct gttccgaccc tgccgcttac cggatacctg tccgcctttc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
445 2701 tcccttcggg aagcgtggcg ctttctcata gctcacgctg taggtatctc agttcggtgt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
446 2761 aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
447 2821 ccttatccgg taactatcgt cttgagtcca acccggtaag acacgactta tcgccactgg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
448 2881 cagcagccac tggtaacagg attagcagag cgaggtatgt aggcggtgct acagagttct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
449 2941 tgaagtggtg gcctaactac ggctacacta gaaggacagt atttggtatc tgcgctctgc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
450 3001 tgaagccagt taccttcgga aaaagagttg gtagctcttg atccggcaaa caaaccaccg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
451 3061 ctggtagcgg tggttttttt gtttgcaagc agcagattac gcgcagaaaa aaaggatctc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
452 3121 aagaagatcc tttgatcttt tctacggggt ctgacgctca gtggaacgaa aactcacgtt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
453 3181 aagggatttt ggtcatgaga ttatcaaaaa ggatcttcac ctagatcctt ttaaattaaa
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
454 3241 aatgaagttt taaatcaatc taaagtatat atgagtaaac ttggtctgac agttaccaat
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
455 3301 gcttaatcag tgaggcacct atctcagcga tctgtctatt tcgttcatcc atagttgcct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
456 3361 gactccccgt cgtgtagata actacgatac gggagggctt accatctggc cccagtgctg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
457 3421 caatgatacc gcgagaccca cgctcaccgg ctccagattt atcagcaata aaccagccag
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
458 3481 ccggaagggc cgagcgcaga agtggtcctg caactttatc cgcctccatc cagtctatta
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
459 3541 attgttgccg ggaagctaga gtaagtagtt cgccagttaa tagtttgcgc aacgttgttg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
460 3601 ccattgctgc aggcatcgtg gtgtcacgct cgtcgtttgg tatggcttca ttcagctccg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
461 3661 gttcccaacg atcaaggcga gttacatgat cccccatgtt gtgcaaaaaa gcggttagct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
462 3721 ccttcggtcc tccgatcgtt gtcagaagta agttggccgc agtgttatca ctcatggtta
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
463 3781 tggcagcact gcataattct cttactgtca tgccatccgt aagatgcttt tctgtgactg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
464 3841 gtgagtactc aaccaagtca ttctgagaat agtgtatgcg gcgaccgagt tgctcttgcc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
465 3901 cggcgtcaac acgggataat accgcgccac atagcagaac tttaaaagtg ctcatcattg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
466 3961 gaaaacgttc ttcggggcga aaactctcaa ggatcttacc gctgttgaga tccagttcga
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
467 4021 tgtaacccac tcgtgcaccc aactgatctt cagcatcttt tactttcacc agcgtttctg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
468 4081 ggtgagcaaa aacaggaagg caaaatgccg caaaaaaggg aataagggcg acacggaaat
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
469 4141 gttgaatact catactcttc ctttttcaat attattgaag catttatcag ggttattgtc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
470 4201 tcatgagcgg atacatattt gaatgtattt agaaaaataa acaaataggg gttccgcgca
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
471 4261 catttccccg aaaagtgcca cctgacgtct aagaaaccat tattatcatg acattaacct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
472 4321 ataaaaatag gcgtatcacg aggccctttc gtcttcaaga a
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
473 //
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
474