Mercurial > repos > iuc > snpeff

annotate test-data/input.gbk @ 28:6322be79bd8e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 4bc3ef84687aa6a39f79c2497a5800a9718825cd
author iuc
date Sat, 28 Sep 2024 16:27:56 +0000
parents 5b4ac70948d2
children
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10
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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1 LOCUS LC129268 2808 bp DNA linear SYN 19-MAR-2016
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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2 DEFINITION Synthetic construct DNA, plasmid vector pUC18 including artificial
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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3 sequence.
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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4 ACCESSION LC129268
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5 VERSION LC129268.1
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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6 KEYWORDS .
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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7 SOURCE synthetic construct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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8 ORGANISM synthetic construct
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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9 other sequences; artificial sequences.
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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10 REFERENCE 1
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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11 AUTHORS Takahashi,M., Kita,Y., Mizuno,A. and Goto-Yamamoto,N.
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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12 TITLE Evaluation of method bias in bacterial community analysis
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13 JOURNAL Unpublished
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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14 REFERENCE 2 (bases 1 to 2808)
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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15 AUTHORS Takahashi,M. and Goto-Yamamoto,N.
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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16 TITLE Direct Submission
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17 JOURNAL Submitted (03-MAR-2016) Contact:Masayuki Takahashi National
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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18 Research Institute of Brewing, Technology Development Research
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19 Division; 3-7-1 Kagamiyama, Higashi-hiroshima, Hiroshima 739-0046,
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20 Japan URL :http://www.nrib.go.jp/index.html
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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21 FEATURES Location/Qualifiers
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22 source 1..2808
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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23 /organism="synthetic construct"
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24 /mol_type="other DNA"
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25 /db_xref="taxon:32630"
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26 /note="plasmid vector pUC18 including artificial sequence"
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27 misc_feature 439..560
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28 /note="internal standard DNA for quantification of
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29 microbial rDNA using quantitative PCR"
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30 ORIGIN
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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31 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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32 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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33 121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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34 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc
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35 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat
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36 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt
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37 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgccaa gcttgcatgc ctgcaggtcg
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38 421 actctagagg atccccggaa ctaatacgac tcactatagg gtccgatctt ccgaggtctc
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39 481 atatcgatcg gtagggcatc taatggcttc ggagttcaag ggctatattc gccatgtcag
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40 541 atttgtatgc caaaggccgg gtaccgagct cgaattcgta atcatggtca tagctgtttc
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41 601 ctgtgtgaaa ttgttatccg ctcacaattc cacacaacat acgagccgga agcataaagt
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42 661 gtaaagcctg gggtgcctaa tgagtgagct aactcacatt aattgcgttg cgctcactgc
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43 721 ccgctttcca gtcgggaaac ctgtcgtgcc agctgcatta atgaatcggc caacgcgcgg
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44 781 ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc gctcactgac tcgctgcgct
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45 841 cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa ggcggtaata cggttatcca
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46 901 cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa aaggccagga
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47 961 accgtaaaaa ggccgcgttg ctggcgtttt tccataggct ccgcccccct gacgagcatc
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48 1021 acaaaaatcg acgctcaagt cagaggtggc gaaacccgac aggactataa agataccagg
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49 1081 cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat
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50 1141 acctgtccgc ctttctccct tcgggaagcg tggcgctttc tcatagctca cgctgtaggt
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51 1201 atctcagttc ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa ccccccgttc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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52 1261 agcccgaccg ctgcgcctta tccggtaact atcgtcttga gtccaacccg gtaagacacg
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53 1321 acttatcgcc actggcagca gccactggta acaggattag cagagcgagg tatgtaggcg
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54 1381 gtgctacaga gttcttgaag tggtggccta actacggcta cactagaagg acagtatttg
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55 1441 gtatctgcgc tctgctgaag ccagttacct tcggaaaaag agttggtagc tcttgatccg
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56 1501 gcaaacaaac caccgctggt agcggtggtt tttttgtttg caagcagcag attacgcgca
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57 1561 gaaaaaaagg atctcaagaa gatcctttga tcttttctac ggggtctgac gctcagtgga
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58 1621 acgaaaactc acgttaaggg attttggtca tgagattatc aaaaaggatc ttcacctaga
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59 1681 tccttttaaa ttaaaaatga agttttaaat caatctaaag tatatatgag taaacttggt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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60 1741 ctgacagtta ccaatgctta atcagtgagg cacctatctc agcgatctgt ctatttcgtt
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61 1801 catccatagt tgcctgactc cccgtcgtgt agataactac gatacgggag ggcttaccat
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62 1861 ctggccccag tgctgcaatg ataccgcgag acccacgctc accggctcca gatttatcag
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63 1921 caataaacca gccagccgga agggccgagc gcagaagtgg tcctgcaact ttatccgcct
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64 1981 ccatccagtc tattaattgt tgccgggaag ctagagtaag tagttcgcca gttaatagtt
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65 2041 tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg
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66 2101 cttcattcag ctccggttcc caacgatcaa ggcgagttac atgatccccc atgttgtgca
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67 2161 aaaaagcggt tagctccttc ggtcctccga tcgttgtcag aagtaagttg gccgcagtgt
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68 2221 tatcactcat ggttatggca gcactgcata attctcttac tgtcatgcca tccgtaagat
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69 2281 gcttttctgt gactggtgag tactcaacca agtcattctg agaatagtgt atgcggcgac
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70 2341 cgagttgctc ttgcccggcg tcaatacggg ataataccgc gccacatagc agaactttaa
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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71 2401 aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc ttaccgctgt
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72 2461 tgagatccag ttcgatgtaa cccactcgtg cacccaactg atcttcagca tcttttactt
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73 2521 tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa
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74 2581 gggcgacacg gaaatgttga atactcatac tcttcctttt tcaatattat tgaagcattt
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
75 2641 atcagggtta ttgtctcatg agcggataca tatttgaatg tatttagaaa aataaacaaa
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
76 2701 taggggttcc gcgcacattt ccccgaaaag tgccacctga cgtctaagaa accattatta
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
77 2761 tcatgacatt aacctataaa aataggcgta tcacgaggcc ctttcgtc
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
78 //
5b4ac70948d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff changeset
79