diff test-data/input.gbk @ 10:5b4ac70948d2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input.gbk	Tue Mar 27 09:44:18 2018 -0400
@@ -0,0 +1,79 @@
+LOCUS       LC129268                2808 bp    DNA     linear   SYN 19-MAR-2016
+DEFINITION  Synthetic construct DNA, plasmid vector pUC18 including artificial
+            sequence.
+ACCESSION   LC129268
+VERSION     LC129268.1
+KEYWORDS    .
+SOURCE      synthetic construct
+  ORGANISM  synthetic construct
+            other sequences; artificial sequences.
+REFERENCE   1
+  AUTHORS   Takahashi,M., Kita,Y., Mizuno,A. and Goto-Yamamoto,N.
+  TITLE     Evaluation of method bias in bacterial community analysis
+  JOURNAL   Unpublished
+REFERENCE   2  (bases 1 to 2808)
+  AUTHORS   Takahashi,M. and Goto-Yamamoto,N.
+  TITLE     Direct Submission
+  JOURNAL   Submitted (03-MAR-2016) Contact:Masayuki Takahashi National
+            Research Institute of Brewing, Technology Development Research
+            Division; 3-7-1 Kagamiyama, Higashi-hiroshima, Hiroshima 739-0046,
+            Japan URL :http://www.nrib.go.jp/index.html
+FEATURES             Location/Qualifiers
+     source          1..2808
+                     /organism="synthetic construct"
+                     /mol_type="other DNA"
+                     /db_xref="taxon:32630"
+                     /note="plasmid vector pUC18 including artificial sequence"
+     misc_feature    439..560
+                     /note="internal standard DNA for quantification of
+                     microbial rDNA using quantitative PCR"
+ORIGIN      
+        1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca
+       61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg
+      121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc
+      181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc
+      241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat
+      301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt
+      361 tttcccagtc acgacgttgt aaaacgacgg ccagtgccaa gcttgcatgc ctgcaggtcg
+      421 actctagagg atccccggaa ctaatacgac tcactatagg gtccgatctt ccgaggtctc
+      481 atatcgatcg gtagggcatc taatggcttc ggagttcaag ggctatattc gccatgtcag
+      541 atttgtatgc caaaggccgg gtaccgagct cgaattcgta atcatggtca tagctgtttc
+      601 ctgtgtgaaa ttgttatccg ctcacaattc cacacaacat acgagccgga agcataaagt
+      661 gtaaagcctg gggtgcctaa tgagtgagct aactcacatt aattgcgttg cgctcactgc
+      721 ccgctttcca gtcgggaaac ctgtcgtgcc agctgcatta atgaatcggc caacgcgcgg
+      781 ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc gctcactgac tcgctgcgct
+      841 cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa ggcggtaata cggttatcca
+      901 cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa aaggccagga
+      961 accgtaaaaa ggccgcgttg ctggcgtttt tccataggct ccgcccccct gacgagcatc
+     1021 acaaaaatcg acgctcaagt cagaggtggc gaaacccgac aggactataa agataccagg
+     1081 cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat
+     1141 acctgtccgc ctttctccct tcgggaagcg tggcgctttc tcatagctca cgctgtaggt
+     1201 atctcagttc ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa ccccccgttc
+     1261 agcccgaccg ctgcgcctta tccggtaact atcgtcttga gtccaacccg gtaagacacg
+     1321 acttatcgcc actggcagca gccactggta acaggattag cagagcgagg tatgtaggcg
+     1381 gtgctacaga gttcttgaag tggtggccta actacggcta cactagaagg acagtatttg
+     1441 gtatctgcgc tctgctgaag ccagttacct tcggaaaaag agttggtagc tcttgatccg
+     1501 gcaaacaaac caccgctggt agcggtggtt tttttgtttg caagcagcag attacgcgca
+     1561 gaaaaaaagg atctcaagaa gatcctttga tcttttctac ggggtctgac gctcagtgga
+     1621 acgaaaactc acgttaaggg attttggtca tgagattatc aaaaaggatc ttcacctaga
+     1681 tccttttaaa ttaaaaatga agttttaaat caatctaaag tatatatgag taaacttggt
+     1741 ctgacagtta ccaatgctta atcagtgagg cacctatctc agcgatctgt ctatttcgtt
+     1801 catccatagt tgcctgactc cccgtcgtgt agataactac gatacgggag ggcttaccat
+     1861 ctggccccag tgctgcaatg ataccgcgag acccacgctc accggctcca gatttatcag
+     1921 caataaacca gccagccgga agggccgagc gcagaagtgg tcctgcaact ttatccgcct
+     1981 ccatccagtc tattaattgt tgccgggaag ctagagtaag tagttcgcca gttaatagtt
+     2041 tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg
+     2101 cttcattcag ctccggttcc caacgatcaa ggcgagttac atgatccccc atgttgtgca
+     2161 aaaaagcggt tagctccttc ggtcctccga tcgttgtcag aagtaagttg gccgcagtgt
+     2221 tatcactcat ggttatggca gcactgcata attctcttac tgtcatgcca tccgtaagat
+     2281 gcttttctgt gactggtgag tactcaacca agtcattctg agaatagtgt atgcggcgac
+     2341 cgagttgctc ttgcccggcg tcaatacggg ataataccgc gccacatagc agaactttaa
+     2401 aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc ttaccgctgt
+     2461 tgagatccag ttcgatgtaa cccactcgtg cacccaactg atcttcagca tcttttactt
+     2521 tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa
+     2581 gggcgacacg gaaatgttga atactcatac tcttcctttt tcaatattat tgaagcattt
+     2641 atcagggtta ttgtctcatg agcggataca tatttgaatg tatttagaaa aataaacaaa
+     2701 taggggttcc gcgcacattt ccccgaaaag tgccacctga cgtctaagaa accattatta
+     2761 tcatgacatt aacctataaa aataggcgta tcacgaggcc ctttcgtc
+//
+