Mercurial > repos > iuc > snpeff
annotate test-data/pBR322.gbk @ 21:de67e5082c48 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit aeb660e92b9eb60dc5f90a2078f552018cca96e0"
author | iuc |
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date | Tue, 15 Oct 2019 14:12:54 -0400 |
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5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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1 LOCUS SYNPBR322 4361 bp DNA circular SYN 30-SEP-2008 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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2 DEFINITION Cloning vector pBR322, complete sequence. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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3 ACCESSION J01749 K00005 L08654 M10282 M10283 M10286 M10356 M10784 M10785 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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4 M10786 M33694 V01119 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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5 VERSION J01749.1 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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6 KEYWORDS ampicillin resistance; beta-lactamase; cloning vector; drug |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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7 resistance protein; origin of replication; plasmid; tetracycline |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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8 resistance. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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9 SOURCE Cloning vector pBR322 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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10 ORGANISM Cloning vector pBR322 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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11 other sequences; artificial sequences; vectors. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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12 REFERENCE 1 (bases 1 to 3; 3259 to 4361) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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13 AUTHORS Sutcliffe,J.G. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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14 TITLE Nucleotide sequence of the ampicillin resistance gene of |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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15 Escherichia coli plasmid pBR322 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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16 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 75 (8), 3737-3741 (1978) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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17 PUBMED 358200 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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18 REFERENCE 2 (bases 1 to 4361) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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19 AUTHORS Sutcliffe,J.G. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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20 TITLE Complete nucleotide sequence of the Escherichia coli plasmid pBR322 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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21 JOURNAL Cold Spring Harb. Symp. Quant. Biol. 43 (Pt 1), 77-90 (1979) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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22 PUBMED 383387 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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23 REFERENCE 3 (bases 1500 to 2300) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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24 AUTHORS Reed,R.R., Young,R.A., Steitz,J.A., Grindley,N.D. and Guyer,M.S. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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25 TITLE Transposition of the Escherichia coli insertion element gamma |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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26 generates a five-base-pair repeat |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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27 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 76 (10), 4882-4886 (1979) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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28 PUBMED 388421 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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29 REFERENCE 4 (bases 2207 to 2265) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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30 AUTHORS Covarrubias,L., Cervantes,L., Covarrubias,A., Soberon,X., |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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31 Vichido,I., Blanco,A., Kupersztoch-Portnoy,Y.M. and Bolivar,F. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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32 TITLE Construction and characterization of new cloning vehicles. V. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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33 Mobilization and coding properties of pBR322 and several deletion |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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34 derivatives including pBR327 and pBR328 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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35 JOURNAL Gene 13 (1), 25-35 (1981) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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36 PUBMED 6263753 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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37 REFERENCE 5 (bases 2000 to 2500) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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38 AUTHORS Marians,K.J., Soeller,W. and Zipursky,S.L. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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39 TITLE Maximal limits of the Escherichia coli replication factor Y |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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40 effector site sequences in pBR322 DNA |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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41 JOURNAL J. Biol. Chem. 257 (10), 5656-5662 (1982) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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42 PUBMED 6279609 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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43 REFERENCE 6 (bases 1 to 80; 4151 to 4229; 4349 to 4361) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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44 AUTHORS Brosius,J., Cate,R.L. and Perlmutter,A.P. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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45 TITLE Precise location of two promoters for the beta-lactamase gene of |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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46 pBR322. S1 mapping of ribonucleic acid isolated from Escherichia |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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47 coli or synthesized in vitro |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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48 JOURNAL J. Biol. Chem. 257 (15), 9205-9210 (1982) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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49 PUBMED 6178738 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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50 REFERENCE 7 (bases 4241 to 4343) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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51 AUTHORS Van Dyke,M.W., Hertzberg,R.P. and Dervan,P.B. |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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52 TITLE Map of distamycin, netropsin, and actinomycin binding sites on |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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53 heterogeneous DNA: DNA cleavage-inhibition patterns with |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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54 methidiumpropyl-EDTA.Fe(II) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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55 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79 (18), 5470-5474 (1982) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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56 PUBMED 6291045 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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57 REFERENCE 8 (bases 584 to 709) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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58 AUTHORS Peden,K.W. and Nathans,D. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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59 TITLE Local mutagenesis within deletion loops of DNA heteroduplexes |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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60 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79 (23), 7214-7217 (1982) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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61 PUBMED 6760191 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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62 REFERENCE 9 (bases 373 to 649) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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63 AUTHORS Peden,K.W. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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64 TITLE Revised sequence of the tetracycline-resistance gene of pBR322 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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65 JOURNAL Gene 22 (2-3), 277-280 (1983) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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66 PUBMED 6307828 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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67 REFERENCE 10 (bases 132 to 181) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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68 AUTHORS Watabe,H., Iino,T., Kaneko,T., Shibata,T. and Ando,T. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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69 TITLE A new class of site-specific endodeoxyribonucleases. Endo.Sce I |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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70 isolated from a eukaryote, Saccharomyces cerevisiae |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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71 JOURNAL J. Biol. Chem. 258 (8), 4663-4665 (1983) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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72 PUBMED 6300094 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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73 REFERENCE 11 (bases 368 to 581) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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74 AUTHORS Livneh,Z. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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75 TITLE Directed mutagenesis method for analysis of mutagen specificity: |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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76 application to ultraviolet-induced mutagenesis |
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77 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (1), 237-241 (1983) |
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78 PUBMED 6337373 |
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79 REFERENCE 12 (bases 2627 to 2682; 2781 to 2828) |
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80 AUTHORS Mascharak,P.K., Sugiura,Y., Kuwahara,J., Suzuki,T. and Lippard,S.J. |
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81 TITLE Alteration and activation of sequence-specific cleavage of DNA by |
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82 bleomycin in the presence of the antitumor drug |
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83 cis-diamminedichloroplatinum(II) |
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84 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (22), 6795-6798 (1983) |
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85 PUBMED 6196777 |
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86 REFERENCE 13 (bases 4276 to 4336) |
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87 AUTHORS Schultz,P.G. and Dervan,P.B. |
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88 TITLE Sequence-specific double-strand cleavage of DNA by |
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89 penta-N-methylpyrrolecarboxamide-EDTA X Fe(II) |
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90 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (22), 6834-6837 (1983) |
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91 PUBMED 6417654 |
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92 REFERENCE 14 (bases 518 to 528) |
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93 AUTHORS Sutcliffe,J.G. |
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94 JOURNAL Unpublished |
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95 REFERENCE 15 (bases 2395 to 2495) |
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96 AUTHORS Fuller,R.S., Funnell,B.E. and Kornberg,A. |
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97 TITLE The dnaA protein complex with the E. coli chromosomal replication |
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98 origin (oriC) and other DNA sites |
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99 JOURNAL Cell 38 (3), 889-900 (1984) |
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100 PUBMED 6091903 |
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101 REFERENCE 16 (bases 2729 to 2731) |
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102 AUTHORS Lathe,R., Kieny,M.P., Skory,S. and Lecocq,J.P. |
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103 TITLE Linker tailing: unphosphorylated linker oligonucleotides for |
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104 joining DNA termini |
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105 JOURNAL DNA 3 (2), 173-182 (1984) |
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106 PUBMED 6327214 |
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107 REFERENCE 17 (bases 2729 to 2730) |
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108 AUTHORS Heusterspreute,M. and Davison,J. |
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109 TITLE Restriction site bank vectors. II. DNA sequence analysis of plasmid |
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110 pJRD158 |
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111 JOURNAL DNA 3 (3), 259-268 (1984) |
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112 PUBMED 6086259 |
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113 REFERENCE 18 (bases 2113 to 2186; 2348 to 2415) |
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114 AUTHORS Abarzua,P., Soeller,W. and Marians,K.J. |
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115 TITLE Mutational analysis of primosome assembly sites. I. Distinct |
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116 classes of mutants in the pBR322 Escherichia coli factor Y DNA |
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117 effector sequences |
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118 JOURNAL J. Biol. Chem. 259 (22), 14286-14292 (1984) |
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119 PUBMED 6209275 |
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120 REFERENCE 19 (bases 2348 to 2415) |
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121 AUTHORS Soeller,W., Abarzua,P. and Marians,K.J. |
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122 TITLE Mutational analysis of primosome assembly sites. II. Role of |
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123 secondary structure in the formation of active sites |
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124 JOURNAL J. Biol. Chem. 259 (22), 14293-14300 (1984) |
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125 PUBMED 6150042 |
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126 REFERENCE 20 (bases 1 to 4361) |
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127 AUTHORS Van Dyke,M.M. and Dervan,P.B. |
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128 TITLE Echinomycin binding sites on DNA |
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129 JOURNAL Science 225 (4667), 1122-1127 (1984) |
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130 PUBMED 6089341 |
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131 REFERENCE 21 (sites) |
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132 AUTHORS Pouwels,P.H., Enger-Valk,B.E. and Brammar,W.J. |
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133 JOURNAL (in) CLONING VECTORS. Elsevier Scientific Publishing, Amsterdam |
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134 (1985) |
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135 REMARK Vector I-A-iv-1 |
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136 REFERENCE 22 (bases 1 to 4361) |
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137 AUTHORS Watson,N. |
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138 TITLE A new revision of the sequence of plasmid pBR322 |
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139 JOURNAL Gene 70 (2), 399-403 (1988) |
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140 PUBMED 3063608 |
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141 REFERENCE 23 (sites) |
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142 AUTHORS Gilbert,W. |
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143 TITLE Obtained from VecBase 3.0 |
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144 JOURNAL Unpublished |
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145 COMMENT On or before Apr 4, 2002 this sequence version replaced L08654.1, |
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146 gi:58257. |
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147 The circular sequence is numbered such that 0 is the middle of the |
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148 unique EcoRI site and the count increases first through the tet |
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149 genes, the pMB1 material, and finally through the Tn3 region. |
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150 Plasmid pBR322 contains ampicillin and tetracycline resistance |
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151 genes. The ampicillin resistance gene (amp-r) is a penicillin |
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152 beta-lactamase. Promoters P1 and P3 are for the beta-lactamase |
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153 gene. P3 is the natural promoter, and P1 is artificially created by |
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154 the ligation of two different DNA fragments to create pBR322. P2 is |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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155 in the same region as P1, but it is on the opposite strand and |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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156 initiates transcription in the direction of the tetracycline |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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157 resistance gene. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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158 Mutational studies in the primosome assembly sites indicate four |
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159 types of mutations: Class I having no effect on the activities |
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160 elicited by the DNA site and the bases involved are probably |
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161 spacers; Class II requiring higher Mg-2+ concentrations than the |
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162 wild-type to be fully activated as factor Y ATPase effectors; Class |
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163 III co-inactivating both the ATPase effector and DNA replication |
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164 template activity of the site, indicating that they probably |
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165 represent essential contact points between factor Y and the DNA; |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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166 Class IV having a replication template activity intermediate that |
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167 of class III and class II mutant DNAs. |
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168 Specific sites within or near the origins of replication are |
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169 recognized by dnaA protein. Without dnaA binding to the origin of |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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170 replication chromosomal replication is not possible (15). pBR322 |
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171 DNA contains two separate regions on opposite strands and close to |
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172 the origin of replication which, when in single-stranded form, can |
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173 act as effectors for the ATPase activity of E.coli replication |
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174 factor Y (5). Small fragments of DNA containing these sites when |
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175 cloned in an f1 phage vector act as origins of DNA replication |
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176 allowing the formation of complementary double-stranded DNA in |
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177 rifampicin-resistant, dna(B,G,C)-dependent fashion in vitro (5). |
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178 The biological activity of echinomycin is thought to be related to |
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179 the formation of complexes by intercalating with cellular DNA (20). |
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180 Complete source information: |
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181 Plasmid pBR322 from E.coli (2),(1),(3),(6),(11),(8),(5),(7),(12), |
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182 (13),(10),(9),(14),(18),(19),(15),(20),(16); pBR322 DNA in pXf3 |
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183 (4). |
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184 The following data and their annotation were supplied by Will |
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185 Gilbert under the auspices of the Curator Program. |
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186 CROSSREFERENCE |
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187 #parent |
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188 GenBank(50):pSC101C, GenBank(50):Trn3 |
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189 #offspring |
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190 VecBase(3):pBR325, VecBase(3):pBR327, |
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191 VecBase(3):pBR328, |
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192 VecBase(3):pAT153, VecBase(3):pUC7, |
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193 VecBase(3):pJRD158, |
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194 VecBase(3):PiVX, VecBase(3):PiAN7, |
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195 VecBase(3):pSP64, |
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196 VecBase(3):pSP65, VecBase(3):pGEM1, |
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197 VecBase(3):pGEM2, |
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198 VecBase(3):pGEM3, VecBase(3):pGEM4, |
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199 VecBase(3):pKK223, |
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200 VecBase(3):pLBU3, VecBase(3):pTrS3, |
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201 VecBase(3):pRSVNeo, |
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202 VecBase(3):pSV2Cat, VecBase(3):M13mp9, |
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203 VecBase(3):pHC79, |
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204 VecBase(3):pV34, VecBase(3):pKTH601, |
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205 VecBase(3):pKTH604, |
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206 VecBase(3):pKTH605, VecBase(3):pKTH606, |
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207 VecBase(3):YEp24, |
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208 VecBase(3):YIp5, VecBase(3):YRp17, |
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209 VecBase(3):pSP18, |
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210 VecBase(3):pSP19, |
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211 VecBase(3):pSP6T3, VecBase(3):pSP6T719, |
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212 VecBase(3):pT712, |
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213 VecBase(3):pT713, VecBase(3):pT7T318, |
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214 VecBase(3):pT7T319, |
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215 VecBase(3):pT7T3A18, VecBase(3):pT7T3A19, |
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216 VecBase(3):pEX1, |
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217 VecBase(3):pEX2, VecBase(3):pEX3, |
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218 VecBase(3):pCKSP6, |
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219 VecBase(3):pACYC177, VecBase(3):pKO1, |
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220 VecBase(3):pKO2, |
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221 VecBase(3):pKM1, |
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222 VecBase(3):pKM2, VecBase(3):pMBL1, |
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223 VecBase(3):pMBL604, |
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224 VecBase(3):pMC1511, VecBase(3):pMC1871, |
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225 VecBase(3):pAA37X, |
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226 VecBase(3):pUR278, VecBase(3):pUR288, |
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227 VecBase(3):pUR289, |
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228 VecBase(3):pUR290, VecBase(3):pUR291, |
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229 VecBase(3):pUR292, |
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230 VecBase(3):pUR222. |
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231 FEATURES Location/Qualifiers |
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232 source 1..4361 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
233 /organism="Cloning vector pBR322" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
234 /mol_type="other DNA" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
235 /db_xref="taxon:47470" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
236 /tissue_lib="ATCC 31344, ATCC 37017" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
237 /focus |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
238 source 1..1762 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
239 /organism="Plasmid pSC101" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
240 /mol_type="other DNA" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
241 /db_xref="taxon:2625" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
242 misc_binding 24..27 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
243 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
244 regulatory complement(27..33) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
245 /regulatory_class="promoter" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
246 /note="promoter P1 (6)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
247 misc_binding 39..42 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
248 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
249 regulatory 43..49 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
250 /regulatory_class="promoter" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
251 /note="promoter P2 (6)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
252 misc_binding 53..56 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
253 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
254 misc_binding 67..70 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
255 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
256 misc_binding 80..83 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
257 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
258 gene 86..1276 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
259 /gene="tet" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
260 CDS 86..1276 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
261 /gene="tet" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
262 /codon_start=1 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
263 /transl_table=11 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
264 /product="tetracycline resistance protein" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
265 /protein_id="AAB59735.1" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
266 /translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASH |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
267 YGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAG |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
268 RIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLH |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
269 APFLAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTV |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
270 FFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGE |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
271 KQAIIAGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQG |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
272 QLQGSLAALTSLTSITGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSR |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
273 ATST" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
274 misc_feature complement(141..142) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
275 /note="Endo.Sce I cleavage site coordinated with site at |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
276 base 146 (10)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
277 misc_feature 146..147 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
278 /gene="tet" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
279 /note="Endo.Sce I cleavage site coordinated with site at |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
280 base 142 (10)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
281 misc_binding 411..414 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
282 /gene="tet" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
283 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
284 misc_difference 426 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
285 /gene="tet" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
286 /note="conflict" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
287 /citation=[11] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
288 /replace="" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
289 misc_binding 469..472 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
290 /gene="tet" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
291 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
292 old_sequence 526..528 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
293 /gene="tet" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
294 /citation=[17] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
295 repeat_region complement(1515..1519) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
296 /note="gamma-delta insertion target sequence" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
297 /rpt_type=direct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
298 misc_feature 1636..1762 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
299 /note="from pSC101 (bp 1860-1986)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
300 repeat_region complement(1788..1792) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
301 /note="gamma-delta insertion target sequence" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
302 /rpt_type=direct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
303 misc_difference 1891..1892 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
304 /note="conflict" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
305 /citation=[23] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
306 /replace="att" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
307 old_sequence 1892..1893 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
308 /citation=[2] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
309 /citation=[22] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
310 regulatory 1905..1910 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
311 /regulatory_class="ribosome_binding_site" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
312 regulatory 1905..1909 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
313 /regulatory_class="ribosome_binding_site" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
314 /note="Shine-Dalgarno sequence" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
315 misc_difference 1913..1914 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
316 /note="conflict" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
317 /citation=[23] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
318 /replace="caa" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
319 old_sequence 1914..1915 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
320 /citation=[17] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
321 CDS 1915..2106 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
322 /codon_start=1 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
323 /transl_table=11 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
324 /product="ROP protein" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
325 /protein_id="AAB59736.1" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
326 /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDH |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
327 ADELYRSCLARFGDDGENL" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
328 misc_feature 2011..2167 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
329 /note="H-strand Y effector site" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
330 /citation=[5] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
331 repeat_region complement(2245..2249) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
332 /note="gamma-delta insertion target sequence" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
333 /rpt_type=direct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
334 misc_feature complement(2351..2414) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
335 /note="L-strand Y effector site" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
336 /citation=[5] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
337 misc_binding 2439..2447 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
338 /bound_moiety="dnaA" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
339 rep_origin 2535 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
340 old_sequence 2729..2730 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
341 /note="revision according to (17)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
342 /citation=[2] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
343 /citation=[17] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
344 /replace="at" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
345 old_sequence 2729 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
346 /citation=[17] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
347 old_sequence 2730 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
348 /note="revision according to (16)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
349 /citation=[2] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
350 /citation=[16] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
351 /citation=[17] |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
352 /replace="t" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
353 mobile_element 3148..4361 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
354 /mobile_element_type="transposon:Tn3" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
355 repeat_region 3148..3185 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
356 /note="corresponds to one of the 38bp repeats found in Tn3 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
357 (bp 1-38 and complement (4920-4957))" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
358 /rpt_type=inverted |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
359 gene complement(3293..4153) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
360 /gene="bla" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
361 CDS complement(3293..4153) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
362 /gene="bla" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
363 /note="E-286" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
364 /codon_start=1 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
365 /transl_table=11 |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
366 /product="beta-lactamase" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
367 /protein_id="AAB59737.1" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
368 /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
369 IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
370 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
371 DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
372 LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
373 EIGASLIKHW" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
374 sig_peptide complement(4085..4153) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
375 /gene="bla" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
376 mat_peptide complement(3296..4084) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
377 /gene="bla" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
378 /product="beta-lactamase" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
379 regulatory complement(4161..4165) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
380 /regulatory_class="ribosome_binding_site" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
381 /note="Shine-Dalgarno sequence" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
382 regulatory complement(4188..4194) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
383 /regulatory_class="promoter" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
384 /note="promoter P3 (6)" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
385 misc_binding complement(4268..4271) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
386 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
387 misc_binding complement(4280..4283) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
388 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
389 misc_binding complement(4285..4288) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
390 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
391 misc_binding complement(4296..4299) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
392 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
393 misc_binding complement(4311..4314) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
394 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
395 misc_binding complement(4317..4320) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
396 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
397 misc_binding complement(4331..4334) |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
398 /bound_moiety="echinomycin" |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
399 ORIGIN |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
400 1 ttctcatgtt tgacagctta tcatcgataa gctttaatgc ggtagtttat cacagttaaa |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
401 61 ttgctaacgc agtcaggcac cgtgtatgaa atctaacaat gcgctcatcg tcatcctcgg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
402 121 caccgtcacc ctggatgctg taggcatagg cttggttatg ccggtactgc cgggcctctt |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
403 181 gcgggatatc gtccattccg acagcatcgc cagtcactat ggcgtgctgc tagcgctata |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
404 241 tgcgttgatg caatttctat gcgcacccgt tctcggagca ctgtccgacc gctttggccg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
405 301 ccgcccagtc ctgctcgctt cgctacttgg agccactatc gactacgcga tcatggcgac |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
406 361 cacacccgtc ctgtggatcc tctacgccgg acgcatcgtg gccggcatca ccggcgccac |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
407 421 aggtgcggtt gctggcgcct atatcgccga catcaccgat ggggaagatc gggctcgcca |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
408 481 cttcgggctc atgagcgctt gtttcggcgt gggtatggtg gcaggccccg tggccggggg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
409 541 actgttgggc gccatctcct tgcatgcacc attccttgcg gcggcggtgc tcaacggcct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
410 601 caacctacta ctgggctgct tcctaatgca ggagtcgcat aagggagagc gtcgaccgat |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
411 661 gcccttgaga gccttcaacc cagtcagctc cttccggtgg gcgcggggca tgactatcgt |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
412 721 cgccgcactt atgactgtct tctttatcat gcaactcgta ggacaggtgc cggcagcgct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
413 781 ctgggtcatt ttcggcgagg accgctttcg ctggagcgcg acgatgatcg gcctgtcgct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
414 841 tgcggtattc ggaatcttgc acgccctcgc tcaagccttc gtcactggtc ccgccaccaa |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
415 901 acgtttcggc gagaagcagg ccattatcgc cggcatggcg gccgacgcgc tgggctacgt |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
416 961 cttgctggcg ttcgcgacgc gaggctggat ggccttcccc attatgattc ttctcgcttc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
417 1021 cggcggcatc gggatgcccg cgttgcaggc catgctgtcc aggcaggtag atgacgacca |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
418 1081 tcagggacag cttcaaggat cgctcgcggc tcttaccagc ctaacttcga tcactggacc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
419 1141 gctgatcgtc acggcgattt atgccgcctc ggcgagcaca tggaacgggt tggcatggat |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
420 1201 tgtaggcgcc gccctatacc ttgtctgcct ccccgcgttg cgtcgcggtg catggagccg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
421 1261 ggccacctcg acctgaatgg aagccggcgg cacctcgcta acggattcac cactccaaga |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
422 1321 attggagcca atcaattctt gcggagaact gtgaatgcgc aaaccaaccc ttggcagaac |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
423 1381 atatccatcg cgtccgccat ctccagcagc cgcacgcggc gcatctcggg cagcgttggg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
424 1441 tcctggccac gggtgcgcat gatcgtgctc ctgtcgttga ggacccggct aggctggcgg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
425 1501 ggttgcctta ctggttagca gaatgaatca ccgatacgcg agcgaacgtg aagcgactgc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
426 1561 tgctgcaaaa cgtctgcgac ctgagcaaca acatgaatgg tcttcggttt ccgtgtttcg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
427 1621 taaagtctgg aaacgcggaa gtcagcgccc tgcaccatta tgttccggat ctgcatcgca |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
428 1681 ggatgctgct ggctaccctg tggaacacct acatctgtat taacgaagcg ctggcattga |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
429 1741 ccctgagtga tttttctctg gtcccgccgc atccataccg ccagttgttt accctcacaa |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
430 1801 cgttccagta accgggcatg ttcatcatca gtaacccgta tcgtgagcat cctctctcgt |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
431 1861 ttcatcggta tcattacccc catgaacaga aatccccctt acacggaggc atcagtgacc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
432 1921 aaacaggaaa aaaccgccct taacatggcc cgctttatca gaagccagac attaacgctt |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
433 1981 ctggagaaac tcaacgagct ggacgcggat gaacaggcag acatctgtga atcgcttcac |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
434 2041 gaccacgctg atgagcttta ccgcagctgc ctcgcgcgtt tcggtgatga cggtgaaaac |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
435 2101 ctctgacaca tgcagctccc ggagacggtc acagcttgtc tgtaagcgga tgccgggagc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
436 2161 agacaagccc gtcagggcgc gtcagcgggt gttggcgggt gtcggggcgc agccatgacc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
437 2221 cagtcacgta gcgatagcgg agtgtatact ggcttaacta tgcggcatca gagcagattg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
438 2281 tactgagagt gcaccatatg cggtgtgaaa taccgcacag atgcgtaagg agaaaatacc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
439 2341 gcatcaggcg ctcttccgct tcctcgctca ctgactcgct gcgctcggtc gttcggctgc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
440 2401 ggcgagcggt atcagctcac tcaaaggcgg taatacggtt atccacagaa tcaggggata |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
441 2461 acgcaggaaa gaacatgtga gcaaaaggcc agcaaaaggc caggaaccgt aaaaaggccg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
442 2521 cgttgctggc gtttttccat aggctccgcc cccctgacga gcatcacaaa aatcgacgct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
443 2581 caagtcagag gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggaa |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
444 2641 gctccctcgt gcgctctcct gttccgaccc tgccgcttac cggatacctg tccgcctttc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
445 2701 tcccttcggg aagcgtggcg ctttctcata gctcacgctg taggtatctc agttcggtgt |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
446 2761 aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
447 2821 ccttatccgg taactatcgt cttgagtcca acccggtaag acacgactta tcgccactgg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
448 2881 cagcagccac tggtaacagg attagcagag cgaggtatgt aggcggtgct acagagttct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
449 2941 tgaagtggtg gcctaactac ggctacacta gaaggacagt atttggtatc tgcgctctgc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
450 3001 tgaagccagt taccttcgga aaaagagttg gtagctcttg atccggcaaa caaaccaccg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
451 3061 ctggtagcgg tggttttttt gtttgcaagc agcagattac gcgcagaaaa aaaggatctc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
452 3121 aagaagatcc tttgatcttt tctacggggt ctgacgctca gtggaacgaa aactcacgtt |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
453 3181 aagggatttt ggtcatgaga ttatcaaaaa ggatcttcac ctagatcctt ttaaattaaa |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
454 3241 aatgaagttt taaatcaatc taaagtatat atgagtaaac ttggtctgac agttaccaat |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
455 3301 gcttaatcag tgaggcacct atctcagcga tctgtctatt tcgttcatcc atagttgcct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
456 3361 gactccccgt cgtgtagata actacgatac gggagggctt accatctggc cccagtgctg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
457 3421 caatgatacc gcgagaccca cgctcaccgg ctccagattt atcagcaata aaccagccag |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
458 3481 ccggaagggc cgagcgcaga agtggtcctg caactttatc cgcctccatc cagtctatta |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
iuc
parents:
diff
changeset
|
459 3541 attgttgccg ggaagctaga gtaagtagtt cgccagttaa tagtttgcgc aacgttgttg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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460 3601 ccattgctgc aggcatcgtg gtgtcacgct cgtcgtttgg tatggcttca ttcagctccg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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461 3661 gttcccaacg atcaaggcga gttacatgat cccccatgtt gtgcaaaaaa gcggttagct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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462 3721 ccttcggtcc tccgatcgtt gtcagaagta agttggccgc agtgttatca ctcatggtta |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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463 3781 tggcagcact gcataattct cttactgtca tgccatccgt aagatgcttt tctgtgactg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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464 3841 gtgagtactc aaccaagtca ttctgagaat agtgtatgcg gcgaccgagt tgctcttgcc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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465 3901 cggcgtcaac acgggataat accgcgccac atagcagaac tttaaaagtg ctcatcattg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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466 3961 gaaaacgttc ttcggggcga aaactctcaa ggatcttacc gctgttgaga tccagttcga |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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467 4021 tgtaacccac tcgtgcaccc aactgatctt cagcatcttt tactttcacc agcgtttctg |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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468 4081 ggtgagcaaa aacaggaagg caaaatgccg caaaaaaggg aataagggcg acacggaaat |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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469 4141 gttgaatact catactcttc ctttttcaat attattgaag catttatcag ggttattgtc |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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470 4201 tcatgagcgg atacatattt gaatgtattt agaaaaataa acaaataggg gttccgcgca |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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471 4261 catttccccg aaaagtgcca cctgacgtct aagaaaccat tattatcatg acattaacct |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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472 4321 ataaaaatag gcgtatcacg aggccctttc gtcttcaaga a |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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473 // |
5b4ac70948d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
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474 |