Mercurial > repos > iuc > snpeff
comparison test-data/input.gbk @ 10:5b4ac70948d2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit eea43430ff90fe6b13b295f6d5efb2208401a7ef
| author | iuc |
|---|---|
| date | Tue, 27 Mar 2018 09:44:18 -0400 |
| parents | |
| children |
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| 9:68693743661e | 10:5b4ac70948d2 |
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| 1 LOCUS LC129268 2808 bp DNA linear SYN 19-MAR-2016 | |
| 2 DEFINITION Synthetic construct DNA, plasmid vector pUC18 including artificial | |
| 3 sequence. | |
| 4 ACCESSION LC129268 | |
| 5 VERSION LC129268.1 | |
| 6 KEYWORDS . | |
| 7 SOURCE synthetic construct | |
| 8 ORGANISM synthetic construct | |
| 9 other sequences; artificial sequences. | |
| 10 REFERENCE 1 | |
| 11 AUTHORS Takahashi,M., Kita,Y., Mizuno,A. and Goto-Yamamoto,N. | |
| 12 TITLE Evaluation of method bias in bacterial community analysis | |
| 13 JOURNAL Unpublished | |
| 14 REFERENCE 2 (bases 1 to 2808) | |
| 15 AUTHORS Takahashi,M. and Goto-Yamamoto,N. | |
| 16 TITLE Direct Submission | |
| 17 JOURNAL Submitted (03-MAR-2016) Contact:Masayuki Takahashi National | |
| 18 Research Institute of Brewing, Technology Development Research | |
| 19 Division; 3-7-1 Kagamiyama, Higashi-hiroshima, Hiroshima 739-0046, | |
| 20 Japan URL :http://www.nrib.go.jp/index.html | |
| 21 FEATURES Location/Qualifiers | |
| 22 source 1..2808 | |
| 23 /organism="synthetic construct" | |
| 24 /mol_type="other DNA" | |
| 25 /db_xref="taxon:32630" | |
| 26 /note="plasmid vector pUC18 including artificial sequence" | |
| 27 misc_feature 439..560 | |
| 28 /note="internal standard DNA for quantification of | |
| 29 microbial rDNA using quantitative PCR" | |
| 30 ORIGIN | |
| 31 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca | |
| 32 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg | |
| 33 121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc | |
| 34 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc | |
| 35 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat | |
| 36 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt | |
| 37 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgccaa gcttgcatgc ctgcaggtcg | |
| 38 421 actctagagg atccccggaa ctaatacgac tcactatagg gtccgatctt ccgaggtctc | |
| 39 481 atatcgatcg gtagggcatc taatggcttc ggagttcaag ggctatattc gccatgtcag | |
| 40 541 atttgtatgc caaaggccgg gtaccgagct cgaattcgta atcatggtca tagctgtttc | |
| 41 601 ctgtgtgaaa ttgttatccg ctcacaattc cacacaacat acgagccgga agcataaagt | |
| 42 661 gtaaagcctg gggtgcctaa tgagtgagct aactcacatt aattgcgttg cgctcactgc | |
| 43 721 ccgctttcca gtcgggaaac ctgtcgtgcc agctgcatta atgaatcggc caacgcgcgg | |
| 44 781 ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc gctcactgac tcgctgcgct | |
| 45 841 cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa ggcggtaata cggttatcca | |
| 46 901 cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa aaggccagga | |
| 47 961 accgtaaaaa ggccgcgttg ctggcgtttt tccataggct ccgcccccct gacgagcatc | |
| 48 1021 acaaaaatcg acgctcaagt cagaggtggc gaaacccgac aggactataa agataccagg | |
| 49 1081 cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat | |
| 50 1141 acctgtccgc ctttctccct tcgggaagcg tggcgctttc tcatagctca cgctgtaggt | |
| 51 1201 atctcagttc ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa ccccccgttc | |
| 52 1261 agcccgaccg ctgcgcctta tccggtaact atcgtcttga gtccaacccg gtaagacacg | |
| 53 1321 acttatcgcc actggcagca gccactggta acaggattag cagagcgagg tatgtaggcg | |
| 54 1381 gtgctacaga gttcttgaag tggtggccta actacggcta cactagaagg acagtatttg | |
| 55 1441 gtatctgcgc tctgctgaag ccagttacct tcggaaaaag agttggtagc tcttgatccg | |
| 56 1501 gcaaacaaac caccgctggt agcggtggtt tttttgtttg caagcagcag attacgcgca | |
| 57 1561 gaaaaaaagg atctcaagaa gatcctttga tcttttctac ggggtctgac gctcagtgga | |
| 58 1621 acgaaaactc acgttaaggg attttggtca tgagattatc aaaaaggatc ttcacctaga | |
| 59 1681 tccttttaaa ttaaaaatga agttttaaat caatctaaag tatatatgag taaacttggt | |
| 60 1741 ctgacagtta ccaatgctta atcagtgagg cacctatctc agcgatctgt ctatttcgtt | |
| 61 1801 catccatagt tgcctgactc cccgtcgtgt agataactac gatacgggag ggcttaccat | |
| 62 1861 ctggccccag tgctgcaatg ataccgcgag acccacgctc accggctcca gatttatcag | |
| 63 1921 caataaacca gccagccgga agggccgagc gcagaagtgg tcctgcaact ttatccgcct | |
| 64 1981 ccatccagtc tattaattgt tgccgggaag ctagagtaag tagttcgcca gttaatagtt | |
| 65 2041 tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg | |
| 66 2101 cttcattcag ctccggttcc caacgatcaa ggcgagttac atgatccccc atgttgtgca | |
| 67 2161 aaaaagcggt tagctccttc ggtcctccga tcgttgtcag aagtaagttg gccgcagtgt | |
| 68 2221 tatcactcat ggttatggca gcactgcata attctcttac tgtcatgcca tccgtaagat | |
| 69 2281 gcttttctgt gactggtgag tactcaacca agtcattctg agaatagtgt atgcggcgac | |
| 70 2341 cgagttgctc ttgcccggcg tcaatacggg ataataccgc gccacatagc agaactttaa | |
| 71 2401 aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc ttaccgctgt | |
| 72 2461 tgagatccag ttcgatgtaa cccactcgtg cacccaactg atcttcagca tcttttactt | |
| 73 2521 tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa | |
| 74 2581 gggcgacacg gaaatgttga atactcatac tcttcctttt tcaatattat tgaagcattt | |
| 75 2641 atcagggtta ttgtctcatg agcggataca tatttgaatg tatttagaaa aataaacaaa | |
| 76 2701 taggggttcc gcgcacattt ccccgaaaag tgccacctga cgtctaagaa accattatta | |
| 77 2761 tcatgacatt aacctataaa aataggcgta tcacgaggcc ctttcgtc | |
| 78 // | |
| 79 |