Mercurial > repos > iuc > snpeff
view data_manager_conf.xml @ 0:e8adfc4c0a6b draft
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author | iuc |
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date | Wed, 11 Dec 2013 08:53:32 -0500 |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" > <data_table name="snpeff_databases"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> </output> </data_table> </data_manager> <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" > <data_table name="snpeff_genomedb"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="directory" relativize_symlinks="True"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/data</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/data</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="snpeff_regulationdb"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> </output> </data_table> <data_table name="snpeff_annotations"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> </output> </data_table> </data_manager> </data_managers>