Mercurial > repos > iuc > snpeff
changeset 19:36dc3690a82c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 530737ce6054364b394db08d42e3777355fa5c05
| author | iuc |
|---|---|
| date | Wed, 12 Sep 2018 14:36:04 -0400 |
| parents | dd3622f501f3 |
| children | 8f92c2b26e6d |
| files | snpeff_get_chr_names.xml |
| diffstat | 1 files changed, 10 insertions(+), 10 deletions(-) [+] |
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--- a/snpeff_get_chr_names.xml Fri Sep 07 10:30:41 2018 -0400 +++ b/snpeff_get_chr_names.xml Wed Sep 12 14:36:04 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@wrapper_version@.galaxy1"> +<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy1"> <description>list chromosome names/lengths</description> <macros> <import>snpEff_macros.xml</import> @@ -39,18 +39,18 @@ <param name="genomeVersion" type="select" label="Genome"> <help>This can only be used on built-in databases manually configured by your galaxy admin.</help> <options from_data_table="snpeffv_genomedb"> - <filter type="static_value" name="snpeff_version" value="@snpeff_version@" column="1"/> + <filter type="static_value" name="SNPEFF_VERSION" value="@SNPEFF_VERSION@" column="1"/> <filter type="unique_value" column="2" /> </options> </param> </when> <when value="history"> - <param name="snpeff_db" type="data" format="snpeffdb" label="@snpeff_version@ Genome Data"> + <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data"> <help>This can only be used on databases in your history that were downloaded using the snpEff download tool.</help> - <options options_filter_attribute="metadata.snpeff_version" > - <filter type="add_value" value="@snpeff_version@" /> + <options options_filter_attribute="metadata.SNPEFF_VERSION" > + <filter type="add_value" value="@SNPEFF_VERSION@" /> </options> - <validator type="expression" message="This version of SnpEff will only work with @snpeff_version@ genome databases">value is not None and value.metadata.snpeff_version == "@snpeff_version@"</validator> + <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.SNPEFF_VERSION == "@SNPEFF_VERSION@"</validator> </param> </when> <when value="named"> @@ -60,12 +60,12 @@ </param> </when> <when value="custom"> - <param name="snpeff_db" type="data" format="snpeffdb" label="@snpeff_version@ Genome Data"> + <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data"> <help>This can only be used on databases in your history that were created using the snpEff build tool.</help> - <options options_filter_attribute="metadata.snpeff_version" > - <filter type="add_value" value="@snpeff_version@" /> + <options options_filter_attribute="metadata.SNPEFF_VERSION" > + <filter type="add_value" value="@SNPEFF_VERSION@" /> </options> - <validator type="expression" message="This version of SnpEff will only work with @snpeff_version@ genome databases">value is not None and value.metadata.snpeff_version == "@snpeff_version@"</validator> + <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.SNPEFF_VERSION == "@SNPEFF_VERSION@"</validator> </param> </when> </conditional>