Mercurial > repos > iuc > spades_metaviralspades
changeset 5:86f66ab58e14 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a09a5e3ee3c76550526f082b97de8da75181a1dd
author | iuc |
---|---|
date | Wed, 13 Jul 2022 07:42:48 +0000 |
parents | 9de69775f512 |
children | e060c3987513 |
files | macros.xml metaviralspades.xml write_tsv_script.py |
diffstat | 3 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Mon Feb 21 10:22:15 2022 +0000 +++ b/macros.xml Wed Jul 13 07:42:48 2022 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">3.15.4</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">spades</requirement>
--- a/metaviralspades.xml Mon Feb 21 10:22:15 2022 +0000 +++ b/metaviralspades.xml Wed Jul 13 07:42:48 2022 +0000 @@ -120,8 +120,9 @@ </output> <output name="out_cs"> <assert_contents> - <has_n_lines n="1"/> + <has_n_lines n="2"/> <has_text_matching expression="#name	length	coverage"/> + <has_text_matching expression="NODE_1	9645	13.774865_cutoff_0_type_circular"/> </assert_contents> </output> <output_collection name="out_cr" type="list" count="3"> @@ -149,8 +150,9 @@ </output> <output name="out_ss"> <assert_contents> - <has_n_lines n="1"/> + <has_n_lines n="2"/> <has_text_matching expression="#name	length	coverage"/> + <has_text_matching expression="NODE_1	9645	13.774865_cutoff_0_type_circular"/> </assert_contents> </output> <output name="out_l">
--- a/write_tsv_script.py Mon Feb 21 10:22:15 2022 +0000 +++ b/write_tsv_script.py Wed Jul 13 07:42:48 2022 +0000 @@ -3,7 +3,7 @@ import re import sys -search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*).*\$" +search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?" replace_str = r"\1_\2\t\3\t\4"