Mercurial > repos > iuc > spades_plasmidspades
comparison plasmidspades.xml @ 7:1708851f8804 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 69c6e337e239e84ce8fec9cf9fb5d820136877b2
| author | iuc |
|---|---|
| date | Tue, 23 Aug 2022 08:00:05 +0000 |
| parents | 75405f5e2cc5 |
| children | 7bb235ff0746 |
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| 6:75405f5e2cc5 | 7:1708851f8804 |
|---|---|
| 160 <has_text_matching expression="#name	length	coverage"/> | 160 <has_text_matching expression="#name	length	coverage"/> |
| 161 <has_text_matching expression="NODE_1	9689	4.668331_component_0"/> | 161 <has_text_matching expression="NODE_1	9689	4.668331_component_0"/> |
| 162 </assert_contents> | 162 </assert_contents> |
| 163 </output> | 163 </output> |
| 164 <output_collection name="out_cr" type="list" count="3"> | 164 <output_collection name="out_cr" type="list" count="3"> |
| 165 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 165 <element name="pl1.fq.gz.fastq.00.0_0"> |
| 166 <assert_contents> | 166 <assert_contents> |
| 167 <has_size value="72173" delta="1000"/> | 167 <has_size value="72173" delta="1000"/> |
| 168 </assert_contents> | 168 </assert_contents> |
| 169 </element> | 169 </element> |
| 170 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 170 <element name="pl2.fq.gz.fastq.00.0_0"> |
| 171 <assert_contents> | 171 <assert_contents> |
| 172 <has_size value="72173" delta="1000"/> | 172 <has_size value="72173" delta="1000"/> |
| 173 </assert_contents> | 173 </assert_contents> |
| 174 </element> | 174 </element> |
| 175 <element name="pl_unpaired.00.0_0.cor"> | 175 <element name="pl_unpaired.00.0_0"> |
| 176 <assert_contents> | 176 <assert_contents> |
| 177 <has_size value="392" delta="100"/> | 177 <has_size value="392" delta="100"/> |
| 178 </assert_contents> | 178 </assert_contents> |
| 179 </element> | 179 </element> |
| 180 </output_collection> | 180 </output_collection> |
| 249 <param name="input1" value="pl1.fq.gz"/> | 249 <param name="input1" value="pl1.fq.gz"/> |
| 250 <param name="input2" value="pl2.fq.gz"/> | 250 <param name="input2" value="pl2.fq.gz"/> |
| 251 </conditional> | 251 </conditional> |
| 252 <param name="optional_output" value="cr,l"/> | 252 <param name="optional_output" value="cr,l"/> |
| 253 <output_collection name="out_cr" type="list" count="3"> | 253 <output_collection name="out_cr" type="list" count="3"> |
| 254 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 254 <element name="pl1.fq.gz.fastq.00.0_0"> |
| 255 <assert_contents> | 255 <assert_contents> |
| 256 <has_size value="72173" delta="1000"/> | 256 <has_size value="72173" delta="1000"/> |
| 257 </assert_contents> | 257 </assert_contents> |
| 258 </element> | 258 </element> |
| 259 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 259 <element name="pl2.fq.gz.fastq.00.0_0"> |
| 260 <assert_contents> | 260 <assert_contents> |
| 261 <has_size value="72173" delta="1000"/> | 261 <has_size value="72173" delta="1000"/> |
| 262 </assert_contents> | 262 </assert_contents> |
| 263 </element> | 263 </element> |
| 264 <element name="pl_unpaired.00.0_0.cor"> | 264 <element name="pl_unpaired.00.0_0"> |
| 265 <assert_contents> | 265 <assert_contents> |
| 266 <has_size value="392" delta="100"/> | 266 <has_size value="392" delta="100"/> |
| 267 </assert_contents> | 267 </assert_contents> |
| 268 </element> | 268 </element> |
| 269 </output_collection> | 269 </output_collection> |
| 281 <param name="input1" value="pl1.fq.gz"/> | 281 <param name="input1" value="pl1.fq.gz"/> |
| 282 <param name="input2" value="pl2.fq.gz"/> | 282 <param name="input2" value="pl2.fq.gz"/> |
| 283 </conditional> | 283 </conditional> |
| 284 <param name="optional_output" value="cr,l"/> | 284 <param name="optional_output" value="cr,l"/> |
| 285 <output_collection name="out_cr" type="list" count="3"> | 285 <output_collection name="out_cr" type="list" count="3"> |
| 286 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 286 <element name="pl1.fq.gz.fastq.00.0_0"> |
| 287 <assert_contents> | 287 <assert_contents> |
| 288 <has_size value="72173" delta="1000"/> | 288 <has_size value="72173" delta="1000"/> |
| 289 </assert_contents> | 289 </assert_contents> |
| 290 </element> | 290 </element> |
| 291 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 291 <element name="pl2.fq.gz.fastq.00.0_0"> |
| 292 <assert_contents> | 292 <assert_contents> |
| 293 <has_size value="72173" delta="1000"/> | 293 <has_size value="72173" delta="1000"/> |
| 294 </assert_contents> | 294 </assert_contents> |
| 295 </element> | 295 </element> |
| 296 <element name="pl_unpaired.00.0_0.cor"> | 296 <element name="pl_unpaired.00.0_0"> |
| 297 <assert_contents> | 297 <assert_contents> |
| 298 <has_size value="392" delta="100"/> | 298 <has_size value="392" delta="100"/> |
| 299 </assert_contents> | 299 </assert_contents> |
| 300 </element> | 300 </element> |
| 301 </output_collection> | 301 </output_collection> |
| 325 <has_text text="--untrusted-contigs"/> | 325 <has_text text="--untrusted-contigs"/> |
| 326 </assert_command> | 326 </assert_command> |
| 327 <param name="mode_sel" value="--careful"/> | 327 <param name="mode_sel" value="--careful"/> |
| 328 <param name="optional_output" value="cr,l"/> | 328 <param name="optional_output" value="cr,l"/> |
| 329 <output_collection name="out_cr" type="list" count="3"> | 329 <output_collection name="out_cr" type="list" count="3"> |
| 330 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 330 <element name="pl1.fq.gz.fastq.00.0_0"> |
| 331 <assert_contents> | 331 <assert_contents> |
| 332 <has_size value="72173" delta="1000"/> | 332 <has_size value="72173" delta="1000"/> |
| 333 </assert_contents> | 333 </assert_contents> |
| 334 </element> | 334 </element> |
| 335 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 335 <element name="pl2.fq.gz.fastq.00.0_0"> |
| 336 <assert_contents> | 336 <assert_contents> |
| 337 <has_size value="72173" delta="1000"/> | 337 <has_size value="72173" delta="1000"/> |
| 338 </assert_contents> | 338 </assert_contents> |
| 339 </element> | 339 </element> |
| 340 <element name="pl_unpaired.00.0_0.cor"> | 340 <element name="pl_unpaired.00.0_0"> |
| 341 <assert_contents> | 341 <assert_contents> |
| 342 <has_size value="392" delta="100"/> | 342 <has_size value="392" delta="100"/> |
| 343 </assert_contents> | 343 </assert_contents> |
| 344 </element> | 344 </element> |
| 345 </output_collection> | 345 </output_collection> |