diff plasmidspades.xml @ 7:1708851f8804 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 69c6e337e239e84ce8fec9cf9fb5d820136877b2

--- a/plasmidspades.xml	Wed Aug 10 13:15:28 2022 +0000
+++ b/plasmidspades.xml	Tue Aug 23 08:00:05 2022 +0000
@@ -162,17 +162,17 @@
                 </assert_contents>
             </output>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="pl1.fq.gz.fastq.00.0_0.cor">
+                <element name="pl1.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl2.fq.gz.fastq.00.0_0.cor">
+                <element name="pl2.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl_unpaired.00.0_0.cor">
+                <element name="pl_unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="392" delta="100"/>
                     </assert_contents>
@@ -251,17 +251,17 @@
             </conditional>
             <param name="optional_output" value="cr,l"/>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="pl1.fq.gz.fastq.00.0_0.cor">
+                <element name="pl1.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl2.fq.gz.fastq.00.0_0.cor">
+                <element name="pl2.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl_unpaired.00.0_0.cor">
+                <element name="pl_unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="392" delta="100"/>
                     </assert_contents>
@@ -283,17 +283,17 @@
             </conditional>
             <param name="optional_output" value="cr,l"/>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="pl1.fq.gz.fastq.00.0_0.cor">
+                <element name="pl1.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl2.fq.gz.fastq.00.0_0.cor">
+                <element name="pl2.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl_unpaired.00.0_0.cor">
+                <element name="pl_unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="392" delta="100"/>
                     </assert_contents>
@@ -327,17 +327,17 @@
             <param name="mode_sel" value="--careful"/>
             <param name="optional_output" value="cr,l"/>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="pl1.fq.gz.fastq.00.0_0.cor">
+                <element name="pl1.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl2.fq.gz.fastq.00.0_0.cor">
+                <element name="pl2.fq.gz.fastq.00.0_0">
                     <assert_contents>
                         <has_size value="72173" delta="1000"/>
                     </assert_contents>
                 </element>
-                <element name="pl_unpaired.00.0_0.cor">
+                <element name="pl_unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="392" delta="100"/>
                     </assert_contents>