Mercurial > repos > iuc > spades_plasmidspades
comparison plasmidspades.xml @ 7:1708851f8804 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 69c6e337e239e84ce8fec9cf9fb5d820136877b2
author | iuc |
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date | Tue, 23 Aug 2022 08:00:05 +0000 |
parents | 75405f5e2cc5 |
children | 7bb235ff0746 |
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6:75405f5e2cc5 | 7:1708851f8804 |
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160 <has_text_matching expression="#name	length	coverage"/> | 160 <has_text_matching expression="#name	length	coverage"/> |
161 <has_text_matching expression="NODE_1	9689	4.668331_component_0"/> | 161 <has_text_matching expression="NODE_1	9689	4.668331_component_0"/> |
162 </assert_contents> | 162 </assert_contents> |
163 </output> | 163 </output> |
164 <output_collection name="out_cr" type="list" count="3"> | 164 <output_collection name="out_cr" type="list" count="3"> |
165 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 165 <element name="pl1.fq.gz.fastq.00.0_0"> |
166 <assert_contents> | 166 <assert_contents> |
167 <has_size value="72173" delta="1000"/> | 167 <has_size value="72173" delta="1000"/> |
168 </assert_contents> | 168 </assert_contents> |
169 </element> | 169 </element> |
170 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 170 <element name="pl2.fq.gz.fastq.00.0_0"> |
171 <assert_contents> | 171 <assert_contents> |
172 <has_size value="72173" delta="1000"/> | 172 <has_size value="72173" delta="1000"/> |
173 </assert_contents> | 173 </assert_contents> |
174 </element> | 174 </element> |
175 <element name="pl_unpaired.00.0_0.cor"> | 175 <element name="pl_unpaired.00.0_0"> |
176 <assert_contents> | 176 <assert_contents> |
177 <has_size value="392" delta="100"/> | 177 <has_size value="392" delta="100"/> |
178 </assert_contents> | 178 </assert_contents> |
179 </element> | 179 </element> |
180 </output_collection> | 180 </output_collection> |
249 <param name="input1" value="pl1.fq.gz"/> | 249 <param name="input1" value="pl1.fq.gz"/> |
250 <param name="input2" value="pl2.fq.gz"/> | 250 <param name="input2" value="pl2.fq.gz"/> |
251 </conditional> | 251 </conditional> |
252 <param name="optional_output" value="cr,l"/> | 252 <param name="optional_output" value="cr,l"/> |
253 <output_collection name="out_cr" type="list" count="3"> | 253 <output_collection name="out_cr" type="list" count="3"> |
254 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 254 <element name="pl1.fq.gz.fastq.00.0_0"> |
255 <assert_contents> | 255 <assert_contents> |
256 <has_size value="72173" delta="1000"/> | 256 <has_size value="72173" delta="1000"/> |
257 </assert_contents> | 257 </assert_contents> |
258 </element> | 258 </element> |
259 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 259 <element name="pl2.fq.gz.fastq.00.0_0"> |
260 <assert_contents> | 260 <assert_contents> |
261 <has_size value="72173" delta="1000"/> | 261 <has_size value="72173" delta="1000"/> |
262 </assert_contents> | 262 </assert_contents> |
263 </element> | 263 </element> |
264 <element name="pl_unpaired.00.0_0.cor"> | 264 <element name="pl_unpaired.00.0_0"> |
265 <assert_contents> | 265 <assert_contents> |
266 <has_size value="392" delta="100"/> | 266 <has_size value="392" delta="100"/> |
267 </assert_contents> | 267 </assert_contents> |
268 </element> | 268 </element> |
269 </output_collection> | 269 </output_collection> |
281 <param name="input1" value="pl1.fq.gz"/> | 281 <param name="input1" value="pl1.fq.gz"/> |
282 <param name="input2" value="pl2.fq.gz"/> | 282 <param name="input2" value="pl2.fq.gz"/> |
283 </conditional> | 283 </conditional> |
284 <param name="optional_output" value="cr,l"/> | 284 <param name="optional_output" value="cr,l"/> |
285 <output_collection name="out_cr" type="list" count="3"> | 285 <output_collection name="out_cr" type="list" count="3"> |
286 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 286 <element name="pl1.fq.gz.fastq.00.0_0"> |
287 <assert_contents> | 287 <assert_contents> |
288 <has_size value="72173" delta="1000"/> | 288 <has_size value="72173" delta="1000"/> |
289 </assert_contents> | 289 </assert_contents> |
290 </element> | 290 </element> |
291 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 291 <element name="pl2.fq.gz.fastq.00.0_0"> |
292 <assert_contents> | 292 <assert_contents> |
293 <has_size value="72173" delta="1000"/> | 293 <has_size value="72173" delta="1000"/> |
294 </assert_contents> | 294 </assert_contents> |
295 </element> | 295 </element> |
296 <element name="pl_unpaired.00.0_0.cor"> | 296 <element name="pl_unpaired.00.0_0"> |
297 <assert_contents> | 297 <assert_contents> |
298 <has_size value="392" delta="100"/> | 298 <has_size value="392" delta="100"/> |
299 </assert_contents> | 299 </assert_contents> |
300 </element> | 300 </element> |
301 </output_collection> | 301 </output_collection> |
325 <has_text text="--untrusted-contigs"/> | 325 <has_text text="--untrusted-contigs"/> |
326 </assert_command> | 326 </assert_command> |
327 <param name="mode_sel" value="--careful"/> | 327 <param name="mode_sel" value="--careful"/> |
328 <param name="optional_output" value="cr,l"/> | 328 <param name="optional_output" value="cr,l"/> |
329 <output_collection name="out_cr" type="list" count="3"> | 329 <output_collection name="out_cr" type="list" count="3"> |
330 <element name="pl1.fq.gz.fastq.00.0_0.cor"> | 330 <element name="pl1.fq.gz.fastq.00.0_0"> |
331 <assert_contents> | 331 <assert_contents> |
332 <has_size value="72173" delta="1000"/> | 332 <has_size value="72173" delta="1000"/> |
333 </assert_contents> | 333 </assert_contents> |
334 </element> | 334 </element> |
335 <element name="pl2.fq.gz.fastq.00.0_0.cor"> | 335 <element name="pl2.fq.gz.fastq.00.0_0"> |
336 <assert_contents> | 336 <assert_contents> |
337 <has_size value="72173" delta="1000"/> | 337 <has_size value="72173" delta="1000"/> |
338 </assert_contents> | 338 </assert_contents> |
339 </element> | 339 </element> |
340 <element name="pl_unpaired.00.0_0.cor"> | 340 <element name="pl_unpaired.00.0_0"> |
341 <assert_contents> | 341 <assert_contents> |
342 <has_size value="392" delta="100"/> | 342 <has_size value="392" delta="100"/> |
343 </assert_contents> | 343 </assert_contents> |
344 </element> | 344 </element> |
345 </output_collection> | 345 </output_collection> |